Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:119471765..119474178-chr6:119478318..119480105,2	K562	blood:
2	chr6:119478156..119480069-chr6:119745368..119747370,2	K562	blood:
3	chr6:119473678..119475392-chr6:119476697..119479561,2	K562	blood:
4	chr6:119468731..119471643-chr6:119476917..119479241,2	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6934023	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9481886	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9489608	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9489610	1.00[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119470200-119482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119474800-119479800	Weak transcription	HepG2	liver
3	chr6:119477000-119480600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:119477000-119480800	Weak transcription	Lung	lung
5	chr6:119477600-119479600	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:119477800-119480000	Enhancers	Fetal Lung	lung
7	chr6:119477800-119482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119478200-119479400	Enhancers	Fetal Muscle Leg	muscle
9	chr6:119478200-119479400	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:119478200-119479600	Enhancers	Fetal Stomach	stomach
11	chr6:119478200-119480200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:119478200-119480400	Enhancers	NHDF-Ad	bronchial
13	chr6:119478200-119480600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:119478200-119482800	Enhancers	Adipose Nuclei	Adipose
15	chr6:119478400-119479400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:119478400-119479600	Enhancers	Ovary	ovary
17	chr6:119478600-119479800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:119478600-119479800	Weak transcription	Spleen	Spleen
19	chr6:119478800-119479600	Weak transcription	Placenta	Placenta
20	chr6:119478800-119480400	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:119479000-119479600	Enhancers	Fetal Brain Male	brain

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