Variant report

Variant	rs57124034
Chromosome Location	chr12:50053984-50053985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50053639..50056299-chr12:50060265..50061800,2	K562	blood:
2	chr12:50052702..50054208-chr12:50054254..50056732,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57046047	1.00[AMR][1000 genomes]
rs57625108	1.00[AMR][1000 genomes]
rs58039341	1.00[AMR][1000 genomes]
rs61438877	1.00[AMR][1000 genomes]
rs73305065	1.00[AMR][1000 genomes]
rs73305068	1.00[AMR][1000 genomes]
rs73305070	1.00[AMR][1000 genomes]
rs73305081	1.00[AMR][1000 genomes]
rs73305100	1.00[AMR][1000 genomes]
rs73305101	1.00[AMR][1000 genomes]
rs73306844	1.00[AMR][1000 genomes]
rs73306846	1.00[AMR][1000 genomes]
rs73306865	1.00[AMR][1000 genomes]
rs73306875	1.00[AMR][1000 genomes]
rs73306891	1.00[AMR][1000 genomes]
rs73309004	1.00[AMR][1000 genomes]
rs73309010	1.00[AMR][1000 genomes]
rs73309013	1.00[AMR][1000 genomes]
rs73309017	1.00[AMR][1000 genomes]
rs73309026	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832406	chr12:49860693-50062136	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv482795	chr12:49897633-50068686	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1045327	chr12:49975040-50551375	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
4	nsv541490	chr12:49975040-50551375	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50030800-50057000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:50031800-50056200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:50034200-50056200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:50034800-50056400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:50034800-50056600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:50035600-50055000	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr12:50035600-50056400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:50036800-50054600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:50038800-50055600	Weak transcription	K562	blood
10	chr12:50038800-50056200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:50039000-50055400	Strong transcription	Dnd41	blood
12	chr12:50039400-50054600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:50040000-50054400	Strong transcription	Primary B cells from cord blood	blood
14	chr12:50041400-50055200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:50041400-50056200	Strong transcription	NH-A	brain
16	chr12:50041800-50054000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:50042000-50054400	Strong transcription	GM12878-XiMat	blood
18	chr12:50042000-50055800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:50042200-50055200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:50042200-50055800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr12:50042400-50056400	Strong transcription	HSMM	muscle
22	chr12:50042400-50067000	Weak transcription	Fetal Brain Male	brain
23	chr12:50042600-50055400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr12:50042800-50056200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:50043000-50056000	Strong transcription	HSMMtube	muscle
26	chr12:50043200-50055400	Strong transcription	Fetal Lung	lung
27	chr12:50043200-50055400	Strong transcription	Fetal Stomach	stomach
28	chr12:50043200-50055800	Weak transcription	Stomach Mucosa	stomach
29	chr12:50043600-50056200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr12:50043800-50055600	Weak transcription	Psoas Muscle	Psoas
31	chr12:50044400-50057000	Weak transcription	Esophagus	oesophagus
32	chr12:50046200-50055200	Weak transcription	Small Intestine	intestine
33	chr12:50046400-50056800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:50046800-50056000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr12:50047200-50056000	Strong transcription	Osteobl	bone
36	chr12:50047400-50056600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr12:50047800-50054400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr12:50048000-50056400	Weak transcription	NHDF-Ad	bronchial
39	chr12:50048200-50055400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr12:50048600-50055400	Weak transcription	Liver	Liver
41	chr12:50049000-50056000	Weak transcription	Fetal Heart	heart
42	chr12:50049600-50055800	Genic enhancers	Primary T cells from cord blood	blood
43	chr12:50050000-50056400	Weak transcription	HMEC	breast
44	chr12:50050200-50054000	Strong transcription	Brain Cingulate Gyrus	brain
45	chr12:50050200-50054600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr12:50050200-50055600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr12:50050400-50054200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr12:50050400-50054600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr12:50050400-50055200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr12:50050600-50054400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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