Variant report

Variant	rs571252699
Chromosome Location	chr9:38404-38405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr9:38318-38671	HepG2	liver:	n/a	n/a
2	ZBTB33	chr9:37696-38964	K562	blood:	n/a	n/a
3	HEY1	chr9:37037-39347	K562	blood:	n/a	n/a
4	SIX5	chr9:37111-39334	K562	blood:	n/a	n/a
5	JUND	chr9:38392-38592	HepG2	liver:	n/a	n/a
6	CEBPD	chr9:38248-38794	K562	blood:	n/a	n/a
7	USF1	chr9:38336-38473	HepG2	liver:	n/a	n/a
8	FOSL2	chr9:38220-38944	HepG2	liver:	n/a	chr9:38490-38501
9	RXRA	chr9:38356-38638	HepG2	liver:	n/a	n/a
10	NR2F2	chr9:38282-38691	K562	blood:	n/a	n/a
11	JUND	chr9:38317-38986	HepG2	liver:	n/a	n/a
12	HEY1	chr9:35288-39469	K562	blood:	n/a	n/a
13	FOSL2	chr9:38174-38766	HepG2	liver:	n/a	chr9:38490-38501
14	TCF12	chr9:38331-38818	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:38260-38664	U87	brain:	n/a	n/a
16	STAT5A	chr9:38189-38767	K562	blood:	n/a	n/a
17	GATA2	chr9:37081-39456	K562	blood:	n/a	n/a
18	CBX3	chr9:38287-38723	K562	blood:	n/a	n/a
19	NR2F2	chr9:37135-39057	K562	blood:	n/a	n/a
20	POLR2A	chr9:35321-39022	H1-hESC	embryonic stem cell:	n/a	n/a
21	ZBTB33	chr9:37116-39068	K562	blood:	n/a	n/a
22	SP1	chr9:38252-38731	K562	blood:	n/a	n/a
23	POLR2A	chr9:38398-38708	Hela-S3	cervix:	n/a	n/a
24	RXRA	chr9:38222-39103	HepG2	liver:	n/a	n/a
25	SIX5	chr9:38403-38836	K562	blood:	n/a	n/a
26	CEBPB	chr9:38292-38653	K562	blood:	n/a	n/a
27	SPI1	chr9:38333-39023	K562	blood:	n/a	n/a
28	CBX3	chr9:37157-39076	K562	blood:	n/a	n/a
29	GABPA	chr9:38307-38923	Hela-S3	cervix:	n/a	n/a
30	TAF1	chr9:38305-38687	Hela-S3	cervix:	n/a	n/a
31	POU2F2	chr9:38272-38874	GM12878	blood:	n/a	n/a
32	TRIM28	chr9:38252-38947	K562	blood:	n/a	n/a
33	CEBPB	chr9:38050-38808	K562	blood:	n/a	n/a
34	STAT5A	chr9:38222-38725	K562	blood:	n/a	n/a

Variant related genes	Relation type
FAM138C	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8400	chr9:10001-51412	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891939	chr9:10001-129899	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv19929	chr9:10485-48531	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv482863	chr9:31933-129899	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv427835	chr9:31994-235675	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv968757	chr9:32355-47190	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3449696	chr9:36352-42150	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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