Variant report

Variant	rs571377552
Chromosome Location	chr19:35659151-35659152
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35657563..35659340-chr19:35750773..35753172,2	K562	blood:
2	chr19:35658697..35660776-chr19:35739212..35740943,2	K562	blood:
3	chr19:35653735..35656865-chr19:35656931..35659382,3	MCF-7	breast:
4	chr19:35642928..35645381-chr19:35657672..35659375,2	MCF-7	breast:
5	chr19:35652170..35655595-chr19:35655947..35659208,4	MCF-7	breast:
6	chr19:35653833..35655711-chr19:35656998..35660022,4	K562	blood:
7	chr19:35658586..35660197-chr19:35739044..35740712,2	K562	blood:
8	chr19:35658538..35660564-chr19:35760467..35762500,2	K562	blood:
9	chr19:35657732..35659414-chr19:35738597..35740391,2	MCF-7	breast:
10	chr19:35658448..35660082-chr19:35706961..35709327,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction
ENSG00000105698	Chromatin interaction
ENSG00000089327	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2757694	chr19:35653642-35673333	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758757	chr19:35653642-35673333	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
7	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
8	esv3395817	chr19:35659112-35663810	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35648000-35661600	Strong transcription	H1 Cell Line	embryonic stem cell
2	chr19:35648000-35661800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:35648200-35662800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr19:35652000-35661800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:35653400-35663800	Weak transcription	Stomach Mucosa	stomach
6	chr19:35653600-35667400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr19:35653800-35661400	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr19:35655200-35667600	Weak transcription	Colonic Mucosa	Colon
9	chr19:35655600-35661400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr19:35657000-35659200	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr19:35657000-35659200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr19:35657200-35660400	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr19:35657400-35662200	Weak transcription	Small Intestine	intestine
14	chr19:35657400-35663200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr19:35657600-35659600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
16	chr19:35657600-35660200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:35657600-35660400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr19:35657600-35660600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr19:35657600-35661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr19:35657600-35663000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr19:35657600-35666800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr19:35657800-35659400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
23	chr19:35657800-35659400	Enhancers	Primary hematopoietic stem cells	blood
24	chr19:35657800-35659400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr19:35657800-35659400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:35657800-35659400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr19:35657800-35659600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr19:35657800-35659600	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr19:35657800-35660600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr19:35657800-35660600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:35657800-35661200	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr19:35657800-35661400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr19:35657800-35661800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr19:35657800-35661800	Strong transcription	NHLF	lung
35	chr19:35657800-35662800	Weak transcription	Fetal Intestine Large	intestine
36	chr19:35657800-35663400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr19:35657800-35663600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr19:35657800-35663800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr19:35657800-35666800	Weak transcription	Right Ventricle	heart
40	chr19:35658000-35659400	Weak transcription	Left Ventricle	heart
41	chr19:35658000-35659800	Genic enhancers	HMEC	breast
42	chr19:35658000-35660000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr19:35658000-35660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr19:35658000-35660400	Weak transcription	Fetal Intestine Small	intestine
45	chr19:35658000-35660800	Genic enhancers	NHEK	skin
46	chr19:35658000-35661000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr19:35658000-35661600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr19:35658000-35662600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr19:35658000-35663600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr19:35658000-35667000	Weak transcription	HSMM	muscle

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