Variant report

Variant	rs57145441
Chromosome Location	chr5:107900508-107900509
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17161364	1.00[AMR][1000 genomes]
rs56123320	1.00[AMR][1000 genomes]
rs59031703	1.00[AMR][1000 genomes]
rs73781358	1.00[AMR][1000 genomes]
rs73781359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107896600-107901000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:107896800-107901000	Weak transcription	Aorta	Aorta
3	chr5:107899000-107901600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107899000-107901600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr5:107899800-107901000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:107899800-107901000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:107900000-107901000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr5:107900000-107901200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:107900400-107900600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr5:107900400-107900800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:107900400-107901200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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