Variant report
| Variant | rs73781358 |
|---|---|
| Chromosome Location | chr5:107764379-107764380 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:107716604..107720208-chr5:107763406..107767429,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145743 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11240963 | 1.00[EUR][1000 genomes] |
| rs17161364 | 1.00[AMR][1000 genomes] |
| rs55825519 | 1.00[EUR][1000 genomes] |
| rs56355836 | 1.00[EUR][1000 genomes] |
| rs56929525 | 1.00[EUR][1000 genomes] |
| rs57145441 | 1.00[AMR][1000 genomes] |
| rs59031703 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59704928 | 1.00[EUR][1000 genomes] |
| rs60042566 | 1.00[EUR][1000 genomes] |
| rs60493671 | 0.89[AFR][1000 genomes] |
| rs61614616 | 1.00[EUR][1000 genomes] |
| rs6594302 | 1.00[EUR][1000 genomes] |
| rs6862778 | 1.00[EUR][1000 genomes] |
| rs6867893 | 1.00[EUR][1000 genomes] |
| rs6879616 | 1.00[EUR][1000 genomes] |
| rs73781332 | 1.00[EUR][1000 genomes] |
| rs73781333 | 1.00[EUR][1000 genomes] |
| rs73781335 | 1.00[EUR][1000 genomes] |
| rs73781336 | 1.00[EUR][1000 genomes] |
| rs73781339 | 1.00[EUR][1000 genomes] |
| rs73781340 | 1.00[EUR][1000 genomes] |
| rs73781341 | 1.00[EUR][1000 genomes] |
| rs73781344 | 1.00[EUR][1000 genomes] |
| rs73781353 | 1.00[EUR][1000 genomes] |
| rs73781354 | 1.00[EUR][1000 genomes] |
| rs73781359 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73781360 | 0.91[AFR][1000 genomes] |
| rs7706235 | 1.00[EUR][1000 genomes] |
| rs7713871 | 1.00[EUR][1000 genomes] |
| rs7725340 | 1.00[EUR][1000 genomes] |
| rs7737226 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882683 | chr5:107476501-107769095 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv882686 | chr5:107564746-107769095 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:107764000-107764400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr5:107764200-107764800 | Enhancers | H1 Cell Line | embryonic stem cell |
