Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107716406..107718614-chr5:107741116..107743935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145743	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11240963	1.00[EUR][1000 genomes]
rs55825519	1.00[EUR][1000 genomes]
rs56929525	1.00[EUR][1000 genomes]
rs59704928	1.00[EUR][1000 genomes]
rs60042566	1.00[EUR][1000 genomes]
rs61614616	1.00[EUR][1000 genomes]
rs6594302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867893	1.00[EUR][1000 genomes]
rs6879616	1.00[EUR][1000 genomes]
rs73781332	1.00[EUR][1000 genomes]
rs73781333	1.00[EUR][1000 genomes]
rs73781335	1.00[EUR][1000 genomes]
rs73781336	1.00[EUR][1000 genomes]
rs73781339	1.00[EUR][1000 genomes]
rs73781340	1.00[EUR][1000 genomes]
rs73781341	1.00[EUR][1000 genomes]
rs73781344	1.00[EUR][1000 genomes]
rs73781345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781353	1.00[EUR][1000 genomes]
rs73781354	1.00[EUR][1000 genomes]
rs73781358	1.00[EUR][1000 genomes]
rs73781359	1.00[EUR][1000 genomes]
rs7706235	1.00[EUR][1000 genomes]
rs7713871	1.00[EUR][1000 genomes]
rs7725340	1.00[EUR][1000 genomes]
rs7737226	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107735000-107745800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: