Variant report

Variant	rs73781354
Chromosome Location	chr5:107753941-107753942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107714638..107722268-chr5:107749146..107755039,15	MCF-7	breast:
2	chr5:107715395..107721337-chr5:107744476..107755519,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145743	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10052047	1.00[ASN][1000 genomes]
rs10056852	1.00[ASN][1000 genomes]
rs10059586	1.00[ASN][1000 genomes]
rs10065014	1.00[ASN][1000 genomes]
rs10065395	1.00[ASN][1000 genomes]
rs10067277	1.00[ASN][1000 genomes]
rs10073065	1.00[ASN][1000 genomes]
rs10073127	1.00[ASN][1000 genomes]
rs10073308	1.00[ASN][1000 genomes]
rs10079970	1.00[ASN][1000 genomes]
rs10080187	1.00[ASN][1000 genomes]
rs11240963	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948673	1.00[ASN][1000 genomes]
rs11951703	1.00[ASN][1000 genomes]
rs11957085	1.00[ASN][1000 genomes]
rs2068131	1.00[ASN][1000 genomes]
rs55800820	1.00[ASN][1000 genomes]
rs55825519	1.00[EUR][1000 genomes]
rs56355836	1.00[EUR][1000 genomes]
rs56369563	1.00[ASN][1000 genomes]
rs56929525	1.00[EUR][1000 genomes]
rs57052551	1.00[ASN][1000 genomes]
rs57210898	1.00[ASN][1000 genomes]
rs57476252	1.00[ASN][1000 genomes]
rs59704928	1.00[EUR][1000 genomes]
rs60042566	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60330899	1.00[ASN][1000 genomes]
rs61441984	1.00[ASN][1000 genomes]
rs61614616	1.00[EUR][1000 genomes]
rs6594302	1.00[EUR][1000 genomes]
rs6594310	1.00[ASN][1000 genomes]
rs6594311	1.00[ASN][1000 genomes]
rs6594312	1.00[ASN][1000 genomes]
rs6594313	1.00[ASN][1000 genomes]
rs6594314	1.00[ASN][1000 genomes]
rs6862778	1.00[EUR][1000 genomes]
rs6867893	1.00[EUR][1000 genomes]
rs6873347	1.00[ASN][1000 genomes]
rs6875136	1.00[ASN][1000 genomes]
rs6879616	1.00[EUR][1000 genomes]
rs6883001	1.00[ASN][1000 genomes]
rs73213932	1.00[ASN][1000 genomes]
rs73213947	1.00[ASN][1000 genomes]
rs73214002	1.00[ASN][1000 genomes]
rs73215826	1.00[ASN][1000 genomes]
rs73215827	1.00[ASN][1000 genomes]
rs73781332	1.00[EUR][1000 genomes]
rs73781333	1.00[EUR][1000 genomes]
rs73781335	1.00[EUR][1000 genomes]
rs73781336	1.00[EUR][1000 genomes]
rs73781339	1.00[EUR][1000 genomes]
rs73781340	1.00[EUR][1000 genomes]
rs73781341	1.00[EUR][1000 genomes]
rs73781344	1.00[EUR][1000 genomes]
rs73781353	1.00[EUR][1000 genomes]
rs73781358	1.00[EUR][1000 genomes]
rs73781359	1.00[EUR][1000 genomes]
rs7701441	1.00[ASN][1000 genomes]
rs7706235	1.00[EUR][1000 genomes]
rs7713871	1.00[EUR][1000 genomes]
rs7721916	1.00[ASN][1000 genomes]
rs7725340	1.00[EUR][1000 genomes]
rs7737226	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv968111	chr5:107743066-107755991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107753600-107754000	Enhancers	Psoas Muscle	Psoas
2	chr5:107753600-107754000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr5:107753800-107754000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:107753800-107754000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:107753800-107754000	Enhancers	Brain Germinal Matrix	brain
6	chr5:107753800-107754000	Enhancers	Fetal Brain Male	brain
7	chr5:107753800-107754200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:107753800-107754200	Enhancers	Right Atrium	heart
9	chr5:107753800-107754400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:107753800-107755000	Enhancers	Skeletal Muscle Female	skeletal muscle

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