Variant report
| Variant | rs57210898 |
|---|---|
| Chromosome Location | chr5:107770432-107770433 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:107717097..107719488-chr5:107767902..107770636,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145743 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10052047 | 1.00[ASN][1000 genomes] |
| rs10056852 | 1.00[ASN][1000 genomes] |
| rs10059586 | 1.00[ASN][1000 genomes] |
| rs10065014 | 1.00[ASN][1000 genomes] |
| rs10065395 | 1.00[ASN][1000 genomes] |
| rs10067277 | 1.00[ASN][1000 genomes] |
| rs10073065 | 1.00[ASN][1000 genomes] |
| rs10073127 | 1.00[ASN][1000 genomes] |
| rs10073308 | 1.00[ASN][1000 genomes] |
| rs10079970 | 1.00[ASN][1000 genomes] |
| rs10080187 | 1.00[ASN][1000 genomes] |
| rs11240963 | 1.00[ASN][1000 genomes] |
| rs11948673 | 1.00[ASN][1000 genomes] |
| rs11951703 | 1.00[ASN][1000 genomes] |
| rs11957085 | 1.00[ASN][1000 genomes] |
| rs2068131 | 1.00[ASN][1000 genomes] |
| rs55800820 | 1.00[ASN][1000 genomes] |
| rs56369563 | 1.00[ASN][1000 genomes] |
| rs56675059 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57052551 | 1.00[ASN][1000 genomes] |
| rs57476252 | 1.00[ASN][1000 genomes] |
| rs60330899 | 1.00[ASN][1000 genomes] |
| rs61441984 | 1.00[ASN][1000 genomes] |
| rs6594310 | 1.00[ASN][1000 genomes] |
| rs6594311 | 1.00[ASN][1000 genomes] |
| rs6594312 | 1.00[ASN][1000 genomes] |
| rs6594313 | 1.00[ASN][1000 genomes] |
| rs6594314 | 1.00[ASN][1000 genomes] |
| rs6873347 | 1.00[ASN][1000 genomes] |
| rs6875136 | 1.00[ASN][1000 genomes] |
| rs6883001 | 1.00[ASN][1000 genomes] |
| rs73213932 | 1.00[ASN][1000 genomes] |
| rs73213947 | 1.00[ASN][1000 genomes] |
| rs73214002 | 1.00[ASN][1000 genomes] |
| rs73215826 | 1.00[ASN][1000 genomes] |
| rs73215827 | 1.00[ASN][1000 genomes] |
| rs73781354 | 1.00[ASN][1000 genomes] |
| rs7701441 | 1.00[ASN][1000 genomes] |
| rs7721916 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
