Variant report

Variant	rs10067277
Chromosome Location	chr5:107856019-107856020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107855833..107857545-chr5:109024014..109025642,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271849	Chromatin interaction
ENSG00000112893	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10052047	1.00[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10056852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10059586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10063019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065014	1.00[ASN][1000 genomes]
rs10065395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10073065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10073127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10073308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10074113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077987	0.91[AFR][1000 genomes]
rs10078003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10080187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11240963	1.00[ASN][1000 genomes]
rs11948673	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11951703	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11956327	1.00[ASW][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11957085	1.00[ASN][1000 genomes]
rs13436889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2068131	1.00[ASN][1000 genomes]
rs55635513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55800820	1.00[ASN][1000 genomes]
rs56369563	1.00[ASN][1000 genomes]
rs57052551	1.00[ASN][1000 genomes]
rs57210898	1.00[ASN][1000 genomes]
rs57476252	1.00[ASN][1000 genomes]
rs57593770	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60330899	1.00[ASN][1000 genomes]
rs61441984	1.00[ASN][1000 genomes]
rs6594310	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594314	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6873347	1.00[ASN][1000 genomes]
rs6875136	1.00[ASN][1000 genomes]
rs6875749	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73213932	1.00[ASN][1000 genomes]
rs73213947	1.00[ASN][1000 genomes]
rs73214002	1.00[ASN][1000 genomes]
rs73215826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73215827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73215833	0.85[AMR][1000 genomes]
rs73781354	1.00[ASN][1000 genomes]
rs7700742	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7701441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7705492	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7706247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7721916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7737618	1.00[ASW][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107852600-107856800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:107853200-107859200	Weak transcription	Fetal Intestine Large	intestine
3	chr5:107853400-107857200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:107853800-107856600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:107854000-107856400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:107854000-107856600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:107854000-107857200	Weak transcription	Fetal Intestine Small	intestine
8	chr5:107855600-107856600	Enhancers	GM12878-XiMat	blood

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