Variant report

Variant	rs13436889
Chromosome Location	chr5:107861864-107861865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10052047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056852	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10059586	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063019	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073065	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073127	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073308	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074113	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10077987	0.82[AFR][1000 genomes]
rs10078003	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10079970	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080187	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11948673	0.85[AMR][1000 genomes]
rs11951703	0.85[AMR][1000 genomes]
rs11956327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436427	1.00[ASN][1000 genomes]
rs55635513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57593770	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594310	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6594311	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594312	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594313	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594314	0.85[AMR][1000 genomes]
rs6875749	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6883001	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73215826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73215827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73215828	1.00[ASN][1000 genomes]
rs73215833	0.85[AMR][1000 genomes]
rs7700742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7701441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7705492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7706247	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7721916	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737618	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:107859800-107864400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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