Variant report

Variant	rs10074113
Chromosome Location	chr5:107859943-107859944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107859256..107860913-chr5:108063920..108066391,2	K562	blood:

Variant related genes	Relation type
ENSG00000272523	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10052047	0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10059586	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064913	1.00[CHB][hapmap]
rs10065395	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067277	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071430	1.00[CHB][hapmap]
rs10073065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074023	1.00[CHB][hapmap]
rs10077987	0.93[AFR][1000 genomes]
rs10078003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10079970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080187	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477914	1.00[CHB][hapmap]
rs10477915	1.00[CHB][hapmap]
rs10477916	1.00[CHB][hapmap]
rs10477917	1.00[CHB][hapmap]
rs11948673	0.85[AMR][1000 genomes]
rs11951703	0.85[AMR][1000 genomes]
rs11956327	1.00[CHB][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436427	1.00[ASN][1000 genomes]
rs13436889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55635513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57593770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594310	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6594311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594314	0.85[AMR][1000 genomes]
rs6875749	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6883001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73215826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73215827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73215828	1.00[ASN][1000 genomes]
rs73215833	0.85[AMR][1000 genomes]
rs7700742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7701441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7705492	1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7706247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7721916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737618	1.00[CHB][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9326735	1.00[CHB][hapmap]
rs9326736	1.00[CHB][hapmap]
rs9326738	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107860800	Enhancers	GM12878-XiMat	blood
2	chr5:107857400-107863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:107857600-107860600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:107859600-107860000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:107859800-107864400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links