Variant report

Variant	rs57052551
Chromosome Location	chr5:107849300-107849301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107843593..107846288-chr5:107847770..107850260,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10052047	1.00[ASN][1000 genomes]
rs10056852	1.00[ASN][1000 genomes]
rs10059586	1.00[ASN][1000 genomes]
rs10065014	1.00[ASN][1000 genomes]
rs10065395	1.00[ASN][1000 genomes]
rs10067277	1.00[ASN][1000 genomes]
rs10073065	1.00[ASN][1000 genomes]
rs10073127	1.00[ASN][1000 genomes]
rs10073308	1.00[ASN][1000 genomes]
rs10079970	1.00[ASN][1000 genomes]
rs10080187	1.00[ASN][1000 genomes]
rs11240963	1.00[ASN][1000 genomes]
rs11948673	1.00[ASN][1000 genomes]
rs11951703	1.00[ASN][1000 genomes]
rs11957085	1.00[ASN][1000 genomes]
rs2068131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55800820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56369563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57210898	1.00[ASN][1000 genomes]
rs57476252	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60330899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61441984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6594310	1.00[ASN][1000 genomes]
rs6594311	1.00[ASN][1000 genomes]
rs6594312	1.00[ASN][1000 genomes]
rs6594313	1.00[ASN][1000 genomes]
rs6594314	1.00[ASN][1000 genomes]
rs6873347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6875136	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6883001	1.00[ASN][1000 genomes]
rs73213932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73213947	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73214002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73215826	1.00[ASN][1000 genomes]
rs73215827	1.00[ASN][1000 genomes]
rs73781354	1.00[ASN][1000 genomes]
rs7701441	1.00[ASN][1000 genomes]
rs7721916	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107848000-107853800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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