Variant report

Variant	rs7737226
Chromosome Location	chr5:107715844-107715845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:107700578..107705838-chr5:107715421..107718628,5	K562	blood:
2	chr5:107703071..107704967-chr5:107714002..107715919,2	MCF-7	breast:
3	chr5:107703017..107709518-chr5:107714821..107720551,7	MCF-7	breast:
4	chr5:102896315..102898883-chr5:107715677..107718329,2	K562	blood:
5	chr5:107693754..107695689-chr5:107714400..107716161,2	K562	blood:
6	chr5:107703047..107709148-chr5:107715421..107721287,10	K562	blood:
7	chr5:107715063..107717038-chr5:110074735..110077588,2	K562	blood:

Variant related genes	Relation type
ENSG00000145743	Chromatin interaction
ENSG00000112874	Chromatin interaction
ENSG00000164209	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11240963	1.00[EUR][1000 genomes]
rs55825519	1.00[EUR][1000 genomes]
rs56355836	1.00[EUR][1000 genomes]
rs56929525	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59704928	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60042566	1.00[EUR][1000 genomes]
rs61614616	1.00[EUR][1000 genomes]
rs6594302	1.00[EUR][1000 genomes]
rs6862778	1.00[EUR][1000 genomes]
rs6866453	0.88[YRI][hapmap]
rs6867893	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6879616	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73781332	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73781333	1.00[EUR][1000 genomes]
rs73781335	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73781336	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73781338	0.84[AFR][1000 genomes]
rs73781339	1.00[EUR][1000 genomes]
rs73781340	1.00[EUR][1000 genomes]
rs73781341	1.00[EUR][1000 genomes]
rs73781344	1.00[EUR][1000 genomes]
rs73781353	1.00[EUR][1000 genomes]
rs73781354	1.00[EUR][1000 genomes]
rs73781358	1.00[EUR][1000 genomes]
rs73781359	1.00[EUR][1000 genomes]
rs7706235	1.00[EUR][1000 genomes]
rs7713871	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7725340	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7726195	0.85[YRI][hapmap]
rs7728430	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107708600-107716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107709600-107716000	Weak transcription	Ovary	ovary
3	chr5:107714000-107716000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:107714200-107716800	Active TSS	Right Atrium	heart
5	chr5:107714200-107718200	Active TSS	Fetal Brain Female	brain
6	chr5:107714200-107718600	Active TSS	GM12878-XiMat	blood
7	chr5:107714400-107716000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:107714400-107716000	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr5:107714400-107718400	Active TSS	Brain Cingulate Gyrus	brain
10	chr5:107714400-107718600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:107714600-107716200	Weak transcription	Gastric	stomach
12	chr5:107714800-107716200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:107714800-107716400	Active TSS	Fetal Heart	heart
14	chr5:107715000-107716000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:107715000-107716000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:107715000-107716000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr5:107715000-107716400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:107715000-107716400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:107715000-107716600	Flanking Active TSS	Dnd41	blood
20	chr5:107715000-107717000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:107715000-107718800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:107715000-107719000	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr5:107715000-107719000	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr5:107715200-107716000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:107715200-107716000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:107715200-107716000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:107715200-107716000	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr5:107715200-107716200	Flanking Active TSS	Osteobl	bone
29	chr5:107715200-107716400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr5:107715200-107718200	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr5:107715200-107718400	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr5:107715200-107718600	Active TSS	NHLF	lung
33	chr5:107715400-107716000	Enhancers	Primary B cells from peripheral blood	blood
34	chr5:107715400-107716000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:107715400-107716000	Active TSS	HepG2	liver
36	chr5:107715400-107716000	Flanking Active TSS	NH-A	brain
37	chr5:107715400-107716000	Flanking Active TSS	NHEK	skin
38	chr5:107715400-107716400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:107715400-107718400	Active TSS	Fetal Stomach	stomach
40	chr5:107715400-107718600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr5:107715400-107718600	Active TSS	Aorta	Aorta
42	chr5:107715400-107719000	Active TSS	Psoas Muscle	Psoas
43	chr5:107715400-107719200	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr5:107715600-107716000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr5:107715600-107716000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
46	chr5:107715600-107716000	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr5:107715600-107716000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr5:107715600-107716000	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr5:107715600-107716000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr5:107715600-107716000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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