Variant report

Variant	rs571456946
Chromosome Location	chr15:93580775-93580776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93580132..93580807-chr15:94662834..94663577,2	MCF-7	breast:
2	chr15:93573714..93576444-chr15:93578040..93581614,3	K562	blood:
3	chr15:93579588..93581404-chr15:93595312..93596856,2	K562	blood:
4	chr15:93578825..93581018-chr15:93588117..93590197,2	K562	blood:
5	chr15:93577362..93579561-chr15:93579719..93582659,2	K562	blood:
6	chr15:93571974..93576181-chr15:93579013..93582773,4	MCF-7	breast:
7	chr15:93579091..93580828-chr15:93586546..93588169,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	nsv904500	chr15:93556442-93584615	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv1043084	chr15:93572133-93598434	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv542471	chr15:93572133-93598434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	esv1815629	chr15:93572782-93596165	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv1045427	chr15:93576982-93598440	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
20	nsv1054502	chr15:93580672-93611598	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
21	nsv542472	chr15:93580672-93611598	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93570200-93586000	Weak transcription	Aorta	Aorta
2	chr15:93570400-93585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:93570400-93586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:93571400-93585800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:93572400-93585800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:93574000-93585800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:93574400-93582200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:93574400-93582400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:93574400-93586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:93574400-93587000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:93574400-93587600	Weak transcription	Left Ventricle	heart
12	chr15:93574800-93599800	Weak transcription	Psoas Muscle	Psoas
13	chr15:93577200-93586000	Weak transcription	Dnd41	blood
14	chr15:93578000-93580800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:93578200-93582400	Enhancers	Fetal Muscle Leg	muscle
16	chr15:93578600-93581400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:93578800-93581600	Enhancers	Placenta	Placenta
18	chr15:93578800-93585800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr15:93579200-93581000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr15:93579200-93581000	Enhancers	Gastric	stomach
21	chr15:93579200-93581200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:93579200-93581200	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:93579200-93581600	Enhancers	Colonic Mucosa	Colon
24	chr15:93579200-93581800	Enhancers	Esophagus	oesophagus
25	chr15:93579400-93581400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr15:93579400-93581600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:93579600-93580800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:93579600-93581000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:93579600-93581800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr15:93579600-93581800	Enhancers	Brain Germinal Matrix	brain
31	chr15:93579600-93583400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:93579600-93583400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:93579800-93588000	Weak transcription	Thymus	Thymus
34	chr15:93580000-93580800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr15:93580000-93580800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:93580000-93581600	Enhancers	Brain Hippocampus Middle	brain
37	chr15:93580000-93581800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:93580000-93587200	Weak transcription	Pancreas	Pancrea
39	chr15:93580200-93580800	Enhancers	HMEC	breast
40	chr15:93580200-93581000	Enhancers	Brain Substantia Nigra	brain
41	chr15:93580200-93581600	Enhancers	Brain Anterior Caudate	brain
42	chr15:93580200-93581600	Enhancers	HSMM	muscle
43	chr15:93580200-93581800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr15:93580200-93581800	Enhancers	HSMMtube	muscle
45	chr15:93580400-93580800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:93580400-93580800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:93580400-93580800	Enhancers	Adipose Nuclei	Adipose
48	chr15:93580400-93580800	Enhancers	NHDF-Ad	bronchial
49	chr15:93580400-93581000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:93580400-93581000	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links