Variant report

Variant	rs571524610
Chromosome Location	chr11:93867206-93867207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93867049..93869190-chr11:94275385..94277277,2	K562	blood:
2	chr11:93860451..93862555-chr11:93865619..93868399,2	MCF-7	breast:
3	chr11:93866030..93868662-chr11:93884389..93887583,3	K562	blood:
4	chr11:93867029..93870976-chr11:93873101..93877852,6	K562	blood:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction
ENSG00000110218	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv989619	chr11:93861937-93872912	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93863400-93867400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr11:93863400-93868600	Enhancers	Pancreas	Pancrea
3	chr11:93863600-93868400	Enhancers	Lung	lung
4	chr11:93863600-93868600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr11:93863600-93868800	Enhancers	Placenta	Placenta
6	chr11:93863600-93871400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:93863800-93868800	Enhancers	Left Ventricle	heart
8	chr11:93863800-93869800	Enhancers	Fetal Muscle Leg	muscle
9	chr11:93863800-93870200	Enhancers	Right Ventricle	heart
10	chr11:93864000-93867800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:93864000-93868200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:93864000-93871200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:93864000-93879800	Weak transcription	Primary T cells from cord blood	blood
14	chr11:93864200-93868000	Enhancers	HUVEC	blood vessel
15	chr11:93864200-93868600	Enhancers	K562	blood
16	chr11:93864400-93867600	Weak transcription	Primary B cells from cord blood	blood
17	chr11:93864400-93868200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:93864400-93868400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:93864400-93868600	Enhancers	Right Atrium	heart
20	chr11:93864400-93869000	Enhancers	Liver	Liver
21	chr11:93864400-93869400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:93864400-93870000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:93864400-93870200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr11:93864400-93872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:93864600-93867400	Active TSS	GM12878-XiMat	blood
26	chr11:93864600-93868000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:93864600-93868200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:93864800-93867400	Weak transcription	Ovary	ovary
29	chr11:93864800-93867800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:93864800-93867800	Weak transcription	Fetal Thymus	thymus
31	chr11:93864800-93868200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:93864800-93868200	Weak transcription	Colonic Mucosa	Colon
33	chr11:93864800-93869600	Enhancers	Colon Smooth Muscle	Colon
34	chr11:93864800-93871200	Weak transcription	Thymus	Thymus
35	chr11:93864800-93873200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:93865000-93867800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr11:93865000-93868000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:93865000-93869400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:93865200-93867400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:93865200-93868000	Weak transcription	Aorta	Aorta
41	chr11:93865200-93868000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:93865200-93868200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:93865400-93867800	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:93865400-93867800	Weak transcription	A549	lung
45	chr11:93865400-93868200	Enhancers	HSMMtube	muscle
46	chr11:93865400-93868200	Enhancers	NHDF-Ad	bronchial
47	chr11:93865400-93881600	Weak transcription	Fetal Intestine Small	intestine
48	chr11:93865600-93867600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:93865600-93867800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr11:93865600-93867800	Enhancers	Stomach Smooth Muscle	stomach

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