Variant report

Variant	rs57164947
Chromosome Location	chr8:119861294-119861295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16891570	0.83[AFR][1000 genomes]
rs16891577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4520195	0.85[AMR][1000 genomes]
rs57098524	0.85[AMR][1000 genomes]
rs59710397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60574576	0.83[AFR][1000 genomes]
rs60864203	0.85[AMR][1000 genomes]
rs6990900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7002995	0.85[AMR][1000 genomes]
rs73315525	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319635	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119856600-119862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:119856600-119862400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:119856800-119861800	Weak transcription	NHEK	skin
4	chr8:119856800-119862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:119856800-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:119857000-119861800	Weak transcription	HMEC	breast
7	chr8:119857000-119862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:119858200-119862000	Enhancers	Hela-S3	cervix
9	chr8:119859000-119862000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119859000-119862200	Weak transcription	Osteobl	bone
11	chr8:119859000-119862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:119859000-119862800	Weak transcription	HSMM	muscle
13	chr8:119859000-119864200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:119861200-119861400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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