Variant report

Variant	rs16891570
Chromosome Location	chr8:119862080-119862081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16891577	0.83[AFR][1000 genomes]
rs1908224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56049457	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56227038	0.89[AMR][1000 genomes]
rs57164947	0.83[AFR][1000 genomes]
rs59029960	0.89[AMR][1000 genomes]
rs59676695	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59710397	0.83[AFR][1000 genomes]
rs60574576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61694778	0.89[AMR][1000 genomes]
rs6990900	0.83[AFR][1000 genomes]
rs73317598	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319603	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319615	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319620	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319628	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319632	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319643	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73709373	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73709374	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73709377	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119856600-119862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:119856600-119862400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:119856800-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:119859000-119862200	Weak transcription	Osteobl	bone
5	chr8:119859000-119862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:119859000-119862800	Weak transcription	HSMM	muscle
7	chr8:119859000-119864200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:119861400-119863600	Weak transcription	HSMMtube	muscle
9	chr8:119861800-119863800	Enhancers	HMEC	breast
10	chr8:119862000-119862400	Flanking Active TSS	Hela-S3	cervix
11	chr8:119862000-119862400	Flanking Active TSS	NHEK	skin
12	chr8:119862000-119862800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:119862000-119863800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:119862000-119864600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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