Variant report

Variant	rs59029960
Chromosome Location	chr8:119927400-119927401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119424882..119426911-chr8:119926050..119928623,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11573951	0.91[AFR][1000 genomes]
rs16891570	0.89[AMR][1000 genomes]
rs1908224	0.89[AMR][1000 genomes]
rs4520195	0.90[AFR][1000 genomes]
rs56049457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56227038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59601387	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59676695	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60574576	0.89[AMR][1000 genomes]
rs61694778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996548	0.89[AMR][1000 genomes]
rs7002995	0.82[AFR][1000 genomes]
rs73317598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319603	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319620	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319628	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319632	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319643	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319660	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319661	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73709373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709374	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv8383	chr8:119926155-119934422	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119920600-119929200	Enhancers	HSMM	muscle
2	chr8:119921200-119929000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:119923600-119928200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:119925200-119929200	Enhancers	Hela-S3	cervix
5	chr8:119926600-119927400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:119926800-119928400	Weak transcription	HSMMtube	muscle
7	chr8:119926800-119928400	Weak transcription	NH-A	brain
8	chr8:119926800-119928800	Weak transcription	NHLF	lung
9	chr8:119926800-119934600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119927000-119927600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr8:119927000-119928400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:119927000-119928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:119927000-119928600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:119927000-119928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:119927000-119928800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:119927000-119928800	Weak transcription	HMEC	breast
17	chr8:119927000-119935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:119927000-119935600	Weak transcription	Osteobl	bone
19	chr8:119927200-119928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:119927200-119928600	Weak transcription	NHDF-Ad	bronchial
21	chr8:119927200-119928800	Weak transcription	NHEK	skin
22	chr8:119927200-119936400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:119927400-119927800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:119927400-119941400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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