Variant report

Variant	rs59601387
Chromosome Location	chr8:119928851-119928852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119927571..119930099-chr8:119939839..119941774,2	MCF-7	breast:
2	chr8:119921054..119923444-chr8:119928585..119930805,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164761	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11573951	0.90[AFR][1000 genomes]
rs4520195	0.89[AFR][1000 genomes]
rs56049457	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs56227038	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59029960	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59676695	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61694778	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7002995	0.81[AFR][1000 genomes]
rs73317598	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319603	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319615	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319620	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319628	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319632	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319643	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73319660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319661	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709373	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73709374	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73709377	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv8383	chr8:119926155-119934422	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119920600-119929200	Enhancers	HSMM	muscle
2	chr8:119921200-119929000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:119925200-119929200	Enhancers	Hela-S3	cervix
4	chr8:119926800-119934600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:119927000-119935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:119927000-119935600	Weak transcription	Osteobl	bone
7	chr8:119927200-119936400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:119927400-119941400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:119928200-119929200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:119928200-119936200	Weak transcription	Fetal Intestine Large	intestine
11	chr8:119928400-119929000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:119928400-119929000	Enhancers	HSMMtube	muscle
13	chr8:119928400-119936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:119928600-119929000	Weak transcription	NH-A	brain
15	chr8:119928600-119929000	Enhancers	NHDF-Ad	bronchial
16	chr8:119928600-119929200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:119928600-119929400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:119928800-119929000	Enhancers	HMEC	breast
19	chr8:119928800-119929000	Enhancers	NHEK	skin
20	chr8:119928800-119929200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:119928800-119929200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:119928800-119929400	Enhancers	NHLF	lung
23	chr8:119928800-119956600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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