Variant report

Variant	rs57168901
Chromosome Location	chr4:107114336-107114337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55738178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56210891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56312801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56907238	0.85[AMR][1000 genomes]
rs57240406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57675949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58275655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58471267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59305790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59940336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60360942	1.00[AMR][1000 genomes]
rs61424243	1.00[AMR][1000 genomes]
rs61621018	0.85[AMR][1000 genomes]
rs72891628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891651	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968424	1.00[AMR][1000 genomes]
rs72968427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7676600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
4	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
6	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
7	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
9	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:107084000-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:107084000-107129800	Weak transcription	Lung	lung
12	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
13	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:107085000-107117800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:107085000-107150000	Weak transcription	Dnd41	blood
17	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
18	chr4:107087200-107129800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:107088400-107166400	Weak transcription	K562	blood
20	chr4:107088800-107116400	Weak transcription	NH-A	brain
21	chr4:107091200-107129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:107091400-107114400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:107091400-107116200	Weak transcription	Fetal Intestine Small	intestine
24	chr4:107091400-107116800	Weak transcription	Brain Germinal Matrix	brain
25	chr4:107091400-107117600	Weak transcription	Fetal Brain Male	brain
26	chr4:107091400-107129800	Weak transcription	Pancreas	Pancrea
27	chr4:107103200-107116000	Weak transcription	Psoas Muscle	Psoas
28	chr4:107103200-107119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:107104200-107116800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:107104600-107140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:107104800-107114600	Weak transcription	Fetal Heart	heart
32	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
33	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:107107000-107149600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:107107200-107130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:107108800-107129600	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:107110000-107116800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:107110600-107114800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr4:107111400-107114800	Strong transcription	Primary B cells from cord blood	blood
40	chr4:107111600-107114800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:107111600-107115000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:107111600-107115000	Strong transcription	Liver	Liver
43	chr4:107111800-107114800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:107111800-107116600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:107111800-107160200	Weak transcription	NHEK	skin
46	chr4:107112000-107117600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:107112200-107114800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:107112200-107114800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:107112200-107114800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:107112200-107114800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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