Variant report

Variant	rs59305790
Chromosome Location	chr4:107086044-107086045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55738178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56210891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56312801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57168901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57240406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57675949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58275655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58471267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59940336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60360942	1.00[AMR][1000 genomes]
rs61424243	1.00[AMR][1000 genomes]
rs72891628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891651	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968424	1.00[AMR][1000 genomes]
rs72968427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7676600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:107073000-107086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
9	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:107075200-107091000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
13	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
14	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:107077000-107089600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr4:107078000-107107800	Weak transcription	HSMMtube	muscle
17	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
18	chr4:107078800-107112200	Weak transcription	Osteobl	bone
19	chr4:107078800-107114200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:107082800-107086800	Weak transcription	Fetal Heart	heart
21	chr4:107083200-107090400	Weak transcription	Fetal Brain Male	brain
22	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:107083800-107114200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
25	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:107084000-107086400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:107084000-107086600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:107084000-107086600	Weak transcription	HSMM	muscle
29	chr4:107084000-107089800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:107084000-107090400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:107084000-107090600	Weak transcription	Liver	Liver
32	chr4:107084000-107090800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:107084000-107090800	Weak transcription	Ovary	ovary
34	chr4:107084000-107091000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:107084000-107091000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:107084000-107091000	Weak transcription	Adipose Nuclei	Adipose
37	chr4:107084000-107091000	Weak transcription	Brain Germinal Matrix	brain
38	chr4:107084000-107091000	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:107084000-107091000	Weak transcription	Esophagus	oesophagus
40	chr4:107084000-107091000	Weak transcription	Left Ventricle	heart
41	chr4:107084000-107091000	Weak transcription	Pancreas	Pancrea
42	chr4:107084000-107091200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:107084000-107092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:107084000-107092400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:107084000-107092400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:107084000-107092600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:107084000-107093800	Weak transcription	Fetal Brain Female	brain
48	chr4:107084000-107094000	Weak transcription	Gastric	stomach
49	chr4:107084000-107094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:107084000-107094400	Weak transcription	Thymus	Thymus

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