Variant report

Variant	rs57170319
Chromosome Location	chr11:93087544-93087545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58066241	1.00[AMR][1000 genomes]
rs58221250	1.00[AMR][1000 genomes]
rs58414279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58458360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58480166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58697418	1.00[AMR][1000 genomes]
rs58751432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60040467	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60295584	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60565982	0.90[AFR][1000 genomes]
rs60713237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61519554	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93082400-93089000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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