Variant report

Variant	rs60295584
Chromosome Location	chr11:93116767-93116768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57170319	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066241	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58221250	1.00[AMR][1000 genomes]
rs58414279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58458360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58480166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58697418	1.00[AMR][1000 genomes]
rs58751432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60040467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60565982	1.00[AFR][1000 genomes]
rs60713237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61519554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
4	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93106200-93117200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93111200-93128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93116600-93116800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:93116600-93117400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:93116600-93122400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links