The 2.0 version of rSNPBase

Variant report

Variant rs57172453
Chromosome Location chr17:45393226-45393227
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:45357200-45398000 Weak transcription Psoas Muscle Psoas
2 chr17:45372400-45394400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr17:45382800-45394600 Weak transcription Small Intestine intestine
4 chr17:45382800-45400800 Weak transcription Lung lung
5 chr17:45388400-45398000 Weak transcription Fetal Muscle Trunk muscle
6 chr17:45388800-45400800 Weak transcription Aorta Aorta
7 chr17:45390400-45394400 Enhancers HUVEC blood vessel
8 chr17:45391200-45393600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
9 chr17:45391200-45394200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr17:45391200-45394600 Enhancers Muscle Satellite Cultured Cells --
11 chr17:45391200-45394800 Enhancers Breast Myoepithelial Primary Cells Breast
12 chr17:45391200-45400800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr17:45391600-45394200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr17:45391800-45395000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr17:45392000-45393600 Enhancers Placenta Amnion Placenta Amnion
16 chr17:45392000-45394400 Enhancers HSMM muscle
17 chr17:45392000-45394800 Enhancers NH-A brain
18 chr17:45392000-45395000 Enhancers NHLF lung
19 chr17:45392000-45395200 Enhancers Osteobl bone
20 chr17:45392200-45393600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr17:45392200-45394800 Enhancers Hela-S3 cervix
22 chr17:45392200-45395000 Enhancers NHDF-Ad bronchial
23 chr17:45392400-45394200 Enhancers Rectal Smooth Muscle rectum
24 chr17:45392400-45395600 Weak transcription GM12878-XiMat blood
25 chr17:45392600-45393600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
26 chr17:45392600-45393600 Enhancers Adipose Nuclei Adipose
27 chr17:45392600-45393800 Enhancers A549 lung
28 chr17:45392600-45394000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr17:45392600-45394000 Enhancers HMEC breast
30 chr17:45392600-45394000 Enhancers NHEK skin
31 chr17:45392600-45394800 Enhancers Liver Liver
32 chr17:45392800-45393600 Enhancers Fetal Stomach stomach
33 chr17:45392800-45393600 Enhancers Skeletal Muscle Male skeletal muscle
34 chr17:45392800-45393800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr17:45392800-45394800 Enhancers Fetal Intestine Large intestine
36 chr17:45392800-45394800 Enhancers Rectal Mucosa Donor 31 rectum
37 chr17:45392800-45395000 Enhancers HepG2 liver
38 chr17:45392800-45395200 Enhancers Fetal Intestine Small intestine
39 chr17:45393000-45393400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr17:45393000-45393800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr17:45393000-45394200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr17:45393000-45394200 Enhancers Rectal Mucosa Donor 29 rectum
43 chr17:45393000-45394400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr17:45393000-45394400 Weak transcription Stomach Smooth Muscle stomach
45 chr17:45393000-45394800 Enhancers Duodenum Mucosa Duodenum
46 chr17:45393000-45398000 Weak transcription Fetal Muscle Leg muscle
47 chr17:45393000-45398200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr17:45393000-45400600 Weak transcription Brain Angular Gyrus brain
49 chr17:45393200-45395800 Weak transcription HSMMtube muscle
50 chr17:45393200-45400600 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015