Variant report

Variant	rs73322332
Chromosome Location	chr17:45395540-45395541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45302596..45304693-chr17:45393589..45396501,2	MCF-7	breast:
2	chr17:45295037..45297924-chr17:45394687..45396289,2	K562	blood:
3	chr17:45302015..45304122-chr17:45394820..45397251,2	K562	blood:

Variant related genes	Relation type
ENSG00000198336	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56721370	1.00[AFR][1000 genomes]
rs57044127	1.00[AFR][1000 genomes]
rs57172453	1.00[AFR][1000 genomes]
rs57180192	1.00[AFR][1000 genomes]
rs57216860	1.00[AFR][1000 genomes]
rs59392615	1.00[AFR][1000 genomes]
rs60348832	1.00[AFR][1000 genomes]
rs60444690	1.00[AFR][1000 genomes]
rs61274872	0.90[AFR][1000 genomes]
rs73320495	0.90[AFR][1000 genomes]
rs73320498	0.90[AFR][1000 genomes]
rs73322311	0.90[AFR][1000 genomes]
rs73322315	0.90[AFR][1000 genomes]
rs73322322	0.90[AFR][1000 genomes]
rs73322325	1.00[AFR][1000 genomes]
rs73322328	0.91[AFR][1000 genomes]
rs73322329	1.00[AFR][1000 genomes]
rs73322392	1.00[AFR][1000 genomes]
rs73322393	1.00[AFR][1000 genomes]
rs73322397	1.00[AFR][1000 genomes]
rs73322398	1.00[AFR][1000 genomes]
rs73322400	1.00[AFR][1000 genomes]
rs73324405	1.00[AFR][1000 genomes]
rs73324407	1.00[AFR][1000 genomes]
rs73324416	0.90[AFR][1000 genomes]
rs73324417	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45357200-45398000	Weak transcription	Psoas Muscle	Psoas
2	chr17:45382800-45400800	Weak transcription	Lung	lung
3	chr17:45388400-45398000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr17:45388800-45400800	Weak transcription	Aorta	Aorta
5	chr17:45391200-45400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:45392400-45395600	Weak transcription	GM12878-XiMat	blood
7	chr17:45393000-45398000	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:45393000-45398200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:45393000-45400600	Weak transcription	Brain Angular Gyrus	brain
10	chr17:45393200-45395800	Weak transcription	HSMMtube	muscle
11	chr17:45393200-45400600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr17:45393200-45400600	Weak transcription	Colon Smooth Muscle	Colon
13	chr17:45393200-45400600	Weak transcription	Fetal Heart	heart
14	chr17:45393200-45400600	Weak transcription	Pancreas	Pancrea
15	chr17:45393600-45398000	Weak transcription	Fetal Stomach	stomach
16	chr17:45393600-45398400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr17:45393800-45395800	Weak transcription	A549	lung
18	chr17:45394200-45400600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr17:45394200-45400600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr17:45394400-45400000	Weak transcription	HUVEC	blood vessel
21	chr17:45394600-45398400	Weak transcription	Adipose Nuclei	Adipose
22	chr17:45394800-45399800	Weak transcription	Hela-S3	cervix
23	chr17:45394800-45400200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr17:45394800-45400400	Weak transcription	NH-A	brain
25	chr17:45394800-45400600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:45394800-45400600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr17:45395000-45400000	Weak transcription	NHDF-Ad	bronchial
28	chr17:45395200-45395600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:45395200-45400600	Weak transcription	Fetal Intestine Small	intestine
30	chr17:45395200-45400600	Weak transcription	Osteobl	bone
31	chr17:45395400-45396800	Enhancers	HepG2	liver

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