Variant report

Variant	rs57172973
Chromosome Location	chr15:55057358-55057359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13379714	1.00[AMR][1000 genomes]
rs1566566	0.83[AFR][1000 genomes]
rs16974972	1.00[AMR][1000 genomes]
rs55791846	1.00[AMR][1000 genomes]
rs55864386	1.00[AMR][1000 genomes]
rs56909278	0.95[AFR][1000 genomes]
rs58775812	1.00[AMR][1000 genomes]
rs60820899	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60910499	1.00[AMR][1000 genomes]
rs61298021	1.00[AMR][1000 genomes]
rs73407659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407663	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411776	0.83[AFR][1000 genomes]
rs73411787	0.83[AFR][1000 genomes]
rs73413739	0.86[AFR][1000 genomes]
rs74014263	1.00[AMR][1000 genomes]
rs74014269	1.00[AMR][1000 genomes]
rs74014270	1.00[AMR][1000 genomes]
rs74014272	1.00[AMR][1000 genomes]
rs74014273	1.00[AMR][1000 genomes]
rs74014274	1.00[AMR][1000 genomes]
rs74014277	1.00[AMR][1000 genomes]
rs74014278	1.00[AMR][1000 genomes]
rs74014284	1.00[AMR][1000 genomes]
rs74014285	1.00[AMR][1000 genomes]
rs74014287	1.00[AMR][1000 genomes]
rs74014288	1.00[AMR][1000 genomes]
rs74014290	1.00[AMR][1000 genomes]
rs74014291	1.00[AMR][1000 genomes]
rs74014292	1.00[AMR][1000 genomes]
rs74014293	1.00[AMR][1000 genomes]
rs74014294	1.00[AMR][1000 genomes]
rs74014295	1.00[AMR][1000 genomes]
rs74014296	1.00[AMR][1000 genomes]
rs74014298	1.00[AMR][1000 genomes]
rs74016813	1.00[AMR][1000 genomes]
rs8040563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv457155	chr15:54943193-55078723	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv569519	chr15:54943193-55078723	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045264	chr15:54981538-55103777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55057200-55057800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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