Variant report

Variant	rs74014270
Chromosome Location	chr15:54914934-54914935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54910155..54912492-chr15:54912771..54915484,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13379714	1.00[AMR][1000 genomes]
rs16974912	1.00[AMR][1000 genomes]
rs16974918	1.00[AMR][1000 genomes]
rs16974964	1.00[AMR][1000 genomes]
rs16974972	1.00[AMR][1000 genomes]
rs2681968	1.00[AMR][1000 genomes]
rs2681971	1.00[AMR][1000 genomes]
rs55791846	1.00[AMR][1000 genomes]
rs55864386	1.00[AMR][1000 genomes]
rs57172973	1.00[AMR][1000 genomes]
rs58775812	1.00[AMR][1000 genomes]
rs58942353	1.00[AMR][1000 genomes]
rs59258545	1.00[AMR][1000 genomes]
rs60233308	1.00[AMR][1000 genomes]
rs60910499	1.00[AMR][1000 genomes]
rs61298021	1.00[AMR][1000 genomes]
rs73407659	1.00[AMR][1000 genomes]
rs73407663	1.00[AMR][1000 genomes]
rs73409746	1.00[AMR][1000 genomes]
rs73409748	1.00[AMR][1000 genomes]
rs74014204	1.00[AMR][1000 genomes]
rs74014255	1.00[AMR][1000 genomes]
rs74014260	1.00[AMR][1000 genomes]
rs74014261	1.00[AMR][1000 genomes]
rs74014263	1.00[AMR][1000 genomes]
rs74014269	1.00[AMR][1000 genomes]
rs74014271	0.96[AFR][1000 genomes]
rs74014272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014274	1.00[AMR][1000 genomes]
rs74014277	1.00[AMR][1000 genomes]
rs74014278	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014284	1.00[AMR][1000 genomes]
rs74014285	1.00[AMR][1000 genomes]
rs74014287	1.00[AMR][1000 genomes]
rs74014288	1.00[AMR][1000 genomes]
rs74014290	1.00[AMR][1000 genomes]
rs74014291	1.00[AMR][1000 genomes]
rs74014292	1.00[AMR][1000 genomes]
rs74014293	1.00[AMR][1000 genomes]
rs74014294	1.00[AMR][1000 genomes]
rs74014295	1.00[AMR][1000 genomes]
rs74014296	1.00[AMR][1000 genomes]
rs74014298	1.00[AMR][1000 genomes]
rs74016813	1.00[AMR][1000 genomes]
rs8040563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904237	chr15:54888537-54927484	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv569509	chr15:54888537-54932716	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv569518	chr15:54898631-54954864	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1043600	chr15:54910593-55010156	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54900000-54920600	Weak transcription	Aorta	Aorta
2	chr15:54906400-54916000	Weak transcription	Fetal Lung	lung
3	chr15:54907400-54915800	Weak transcription	Primary hematopoietic stem cells	blood

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