Variant report

Variant	rs74014260
Chromosome Location	chr15:54900438-54900439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:54900401-54900711	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
UNC13C	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13379714	1.00[AMR][1000 genomes]
rs16974912	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16974918	1.00[AMR][1000 genomes]
rs16974964	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16974972	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2681968	1.00[AMR][1000 genomes]
rs2681971	1.00[AMR][1000 genomes]
rs55791846	1.00[AMR][1000 genomes]
rs55864386	1.00[AMR][1000 genomes]
rs58775812	1.00[AMR][1000 genomes]
rs58942353	1.00[AMR][1000 genomes]
rs59258545	1.00[AMR][1000 genomes]
rs60233308	1.00[AMR][1000 genomes]
rs60910499	1.00[AMR][1000 genomes]
rs61298021	1.00[AMR][1000 genomes]
rs73407659	1.00[AMR][1000 genomes]
rs73407663	1.00[AMR][1000 genomes]
rs73409746	1.00[AMR][1000 genomes]
rs73409748	1.00[AMR][1000 genomes]
rs74014204	1.00[AMR][1000 genomes]
rs74014252	0.93[AFR][1000 genomes]
rs74014255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014261	1.00[AMR][1000 genomes]
rs74014263	1.00[AMR][1000 genomes]
rs74014269	1.00[AMR][1000 genomes]
rs74014270	1.00[AMR][1000 genomes]
rs74014272	1.00[AMR][1000 genomes]
rs74014273	1.00[AMR][1000 genomes]
rs74014274	1.00[AMR][1000 genomes]
rs74014277	1.00[AMR][1000 genomes]
rs74014278	1.00[AMR][1000 genomes]
rs74014284	1.00[AMR][1000 genomes]
rs74014285	1.00[AMR][1000 genomes]
rs74014287	1.00[AMR][1000 genomes]
rs74014288	1.00[AMR][1000 genomes]
rs74014290	1.00[AMR][1000 genomes]
rs74014291	1.00[AMR][1000 genomes]
rs74014292	1.00[AMR][1000 genomes]
rs74014293	1.00[AMR][1000 genomes]
rs74014294	1.00[AMR][1000 genomes]
rs74014295	1.00[AMR][1000 genomes]
rs74014296	1.00[AMR][1000 genomes]
rs74014298	1.00[AMR][1000 genomes]
rs74016813	1.00[AMR][1000 genomes]
rs8024840	0.89[AFR][1000 genomes]
rs8040563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv569508	chr15:54876212-54904782	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv526413	chr15:54876423-54904782	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv904237	chr15:54888537-54927484	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv569509	chr15:54888537-54932716	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv457154	chr15:54892583-54904782	Weak transcription Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv569517	chr15:54892583-54904782	Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv569518	chr15:54898631-54954864	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54899800-54901600	Enhancers	Fetal Lung	lung
2	chr15:54900000-54920600	Weak transcription	Aorta	Aorta
3	chr15:54900200-54901200	Weak transcription	Placenta Amnion	Placenta Amnion

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