Variant report

Variant	rs59258545
Chromosome Location	chr15:54859840-54859841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13379714	1.00[AMR][1000 genomes]
rs16974912	1.00[AMR][1000 genomes]
rs16974918	1.00[AMR][1000 genomes]
rs16974964	1.00[AMR][1000 genomes]
rs16974972	1.00[AMR][1000 genomes]
rs2681968	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2681971	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55791846	1.00[AMR][1000 genomes]
rs55864386	1.00[AMR][1000 genomes]
rs58775812	1.00[AMR][1000 genomes]
rs58942353	1.00[AMR][1000 genomes]
rs60233308	1.00[AMR][1000 genomes]
rs60910499	1.00[AMR][1000 genomes]
rs61298021	1.00[AMR][1000 genomes]
rs74014204	1.00[AMR][1000 genomes]
rs74014255	1.00[AMR][1000 genomes]
rs74014260	1.00[AMR][1000 genomes]
rs74014261	1.00[AMR][1000 genomes]
rs74014263	1.00[AMR][1000 genomes]
rs74014269	1.00[AMR][1000 genomes]
rs74014270	1.00[AMR][1000 genomes]
rs74014272	1.00[AMR][1000 genomes]
rs74014273	1.00[AMR][1000 genomes]
rs74014274	1.00[AMR][1000 genomes]
rs74014277	1.00[AMR][1000 genomes]
rs74014278	1.00[AMR][1000 genomes]
rs74014284	1.00[AMR][1000 genomes]
rs74014285	1.00[AMR][1000 genomes]
rs74014287	1.00[AMR][1000 genomes]
rs74014288	1.00[AMR][1000 genomes]
rs74014290	1.00[AMR][1000 genomes]
rs74014291	1.00[AMR][1000 genomes]
rs74014292	1.00[AMR][1000 genomes]
rs74014293	1.00[AMR][1000 genomes]
rs74014294	1.00[AMR][1000 genomes]
rs74014295	1.00[AMR][1000 genomes]
rs74014296	1.00[AMR][1000 genomes]
rs74014298	1.00[AMR][1000 genomes]
rs74016813	1.00[AMR][1000 genomes]
rs8040563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54857400-54863800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:54858200-54860200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54858800-54860200	Enhancers	Fetal Lung	lung
5	chr15:54859000-54860200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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