Variant report

Variant	rs571776262
Chromosome Location	chr3:21960832-21960833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv998906	chr3:21921707-21962293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1014821	chr3:21929218-21962293	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv876615	chr3:21941259-21965999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1003934	chr3:21960795-21999895	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21955800-21961200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:21957400-21961000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:21960400-21961000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:21960400-21961800	Enhancers	Fetal Lung	lung
5	chr3:21960400-21962400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:21960400-21963000	Enhancers	NHDF-Ad	bronchial
7	chr3:21960600-21961200	Enhancers	Brain Germinal Matrix	brain
8	chr3:21960600-21961400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:21960600-21961800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:21960600-21961800	Enhancers	Fetal Stomach	stomach
11	chr3:21960600-21962000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:21960600-21962400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:21960600-21962400	Enhancers	NH-A	brain
14	chr3:21960800-21961000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:21960800-21961200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:21960800-21961200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr3:21960800-21961200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:21960800-21961600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:21960800-21961800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:21960800-21962000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:21960800-21962200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr3:21960800-21962200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:21960800-21962400	Enhancers	Fetal Heart	heart
24	chr3:21960800-21962400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:21960800-21963000	Enhancers	NHLF	lung

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