Variant report

Variant	rs57179790
Chromosome Location	chr7:27716909-27716910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27716154..27718017-chr7:27726881..27729389,2	K562	blood:
2	chr7:27701170..27703848-chr7:27715195..27717641,2	MCF-7	breast:
3	chr7:27711761..27713688-chr7:27715635..27717751,2	K562	blood:
4	chr7:27716474..27720411-chr7:27722310..27724514,4	K562	blood:
5	chr7:27716638..27718426-chr7:27834376..27836195,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17683094	0.80[AFR][1000 genomes]
rs57032962	1.00[AMR][1000 genomes]
rs59108384	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59360258	1.00[AMR][1000 genomes]
rs61072451	1.00[AMR][1000 genomes]
rs62454909	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27711400-27717000	Weak transcription	K562	blood
2	chr7:27715800-27719000	Enhancers	Fetal Intestine Large	intestine
3	chr7:27716000-27719200	Enhancers	Fetal Intestine Small	intestine
4	chr7:27716200-27717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:27716200-27717000	Enhancers	A549	lung
6	chr7:27716200-27717200	Enhancers	NHDF-Ad	bronchial
7	chr7:27716200-27719600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:27716400-27720800	Enhancers	HepG2	liver
9	chr7:27716800-27717000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:27716800-27717000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:27716800-27717200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:27716800-27717200	Enhancers	NH-A	brain
13	chr7:27716800-27717200	Enhancers	NHEK	skin
14	chr7:27716800-27717400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:27716800-27717600	Enhancers	Hela-S3	cervix
16	chr7:27716800-27719000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:27716800-27719200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:27716800-27719200	Enhancers	Placenta	Placenta
19	chr7:27716800-27719200	Enhancers	HSMM	muscle
20	chr7:27716800-27719800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:27716800-27720000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:27716800-27720000	Enhancers	HMEC	breast
23	chr7:27716800-27720800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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