Variant report

Variant	rs17683094
Chromosome Location	chr7:27673704-27673705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27667898..27670542-chr7:27670905..27674481,3	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1014372	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10249314	1.00[CEU][hapmap]
rs1029604	0.80[CEU][hapmap]
rs11761718	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11761773	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11762056	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11764419	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11764624	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11765792	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11768533	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11771265	0.82[EUR][1000 genomes]
rs11772163	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11773626	0.82[EUR][1000 genomes]
rs17607155	0.84[EUR][1000 genomes]
rs17607303	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs17680908	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2158892	0.88[CEU][hapmap]
rs41326151	0.91[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs42090	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs42093	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs42095	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs42096	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs42097	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs42114	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4722736	0.80[CEU][hapmap]
rs57179790	0.80[AFR][1000 genomes]
rs57863648	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59505903	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60247061	0.82[EUR][1000 genomes]
rs60326970	0.85[EUR][1000 genomes]
rs60939746	0.80[EUR][1000 genomes]
rs61659103	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454846	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62454847	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62454852	0.84[EUR][1000 genomes]
rs62454853	0.84[EUR][1000 genomes]
rs62454854	0.84[EUR][1000 genomes]
rs62454909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454911	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454912	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454913	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62456899	0.85[EUR][1000 genomes]
rs62456903	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62456949	0.88[EUR][1000 genomes]
rs62456952	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62456953	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68015840	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6945079	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6946582	0.88[EUR][1000 genomes]
rs6970160	0.87[CEU][hapmap]
rs6978979	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73075112	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7456595	0.82[EUR][1000 genomes]
rs7790914	0.80[CEU][hapmap]
rs7795207	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7803464	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802647	chr7:27658495-27673924	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27651800-27674200	Weak transcription	Hela-S3	cervix
2	chr7:27654400-27696400	Weak transcription	Gastric	stomach
3	chr7:27658800-27687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:27658800-27688600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:27659800-27675400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:27659800-27679000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:27660000-27680600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:27660200-27674600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:27660400-27675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:27660400-27680200	Weak transcription	Fetal Kidney	kidney
11	chr7:27660600-27674800	Weak transcription	Psoas Muscle	Psoas
12	chr7:27660600-27701000	Weak transcription	Right Ventricle	heart
13	chr7:27660800-27675600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:27660800-27676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:27661000-27675000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:27661000-27675400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:27661000-27679600	Weak transcription	HSMMtube	muscle
18	chr7:27661000-27680600	Weak transcription	HepG2	liver
19	chr7:27661000-27688000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:27661200-27675200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:27661200-27694800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr7:27661400-27675200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:27661400-27688800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:27661400-27700800	Weak transcription	Thymus	Thymus
25	chr7:27661600-27681000	Weak transcription	NHEK	skin
26	chr7:27661800-27674400	Weak transcription	Aorta	Aorta
27	chr7:27661800-27675800	Weak transcription	Primary B cells from cord blood	blood
28	chr7:27661800-27680200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:27661800-27681400	Weak transcription	Pancreas	Pancrea
30	chr7:27661800-27686400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:27661800-27692200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:27661800-27694400	Weak transcription	Lung	lung
33	chr7:27662000-27675200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:27662200-27674400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr7:27662400-27686800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr7:27662600-27688200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr7:27662800-27674200	Weak transcription	Brain Substantia Nigra	brain
38	chr7:27662800-27688000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr7:27663000-27674400	Weak transcription	Brain Angular Gyrus	brain
40	chr7:27663200-27674400	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:27663200-27675000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:27664000-27675200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr7:27664400-27680400	Weak transcription	NH-A	brain
44	chr7:27664600-27681400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:27664800-27688200	Weak transcription	K562	blood
46	chr7:27665000-27680400	Weak transcription	NHDF-Ad	bronchial
47	chr7:27665000-27681000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:27665000-27686000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:27665600-27680000	Weak transcription	HUVEC	blood vessel
50	chr7:27665800-27675200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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