Variant report

Variant	rs2158892
Chromosome Location	chr7:27755965-27755966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27755881..27758481-chr7:27759266..27761772,2	MCF-7	breast:
2	chr7:27702223..27704529-chr7:27754263..27757041,2	K562	blood:
3	chr7:27754406..27757331-chr7:27767738..27770016,2	K562	blood:
4	chr7:27754519..27756508-chr7:27757557..27759836,2	K562	blood:
5	chr7:27748144..27751771-chr7:27755375..27758191,3	K562	blood:
6	chr7:27754780..27756546-chr7:27757578..27760197,2	MCF-7	breast:
7	chr7:27737615..27739453-chr7:27754350..27756193,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1014372	0.87[CEU][hapmap]
rs10249314	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1029604	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11540483	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11761718	0.88[CEU][hapmap]
rs11761773	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs11762056	0.88[CEU][hapmap]
rs11764419	0.88[CEU][hapmap]
rs11764624	0.88[CEU][hapmap]
rs11772163	0.88[CEU][hapmap]
rs1468443	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17607303	0.88[CEU][hapmap]
rs17680908	0.88[CEU][hapmap];1.00[AFR][1000 genomes]
rs17683094	0.88[CEU][hapmap]
rs197	0.87[CEU][hapmap]
rs200	0.87[CEU][hapmap]
rs201	0.87[CEU][hapmap]
rs205	0.87[CEU][hapmap]
rs207	0.87[CEU][hapmap]
rs208	0.87[CEU][hapmap]
rs211	0.85[CEU][hapmap]
rs213	0.87[CEU][hapmap]
rs215	0.87[CEU][hapmap]
rs218	0.87[CEU][hapmap]
rs42090	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs42093	0.88[CEU][hapmap]
rs42097	0.88[CEU][hapmap]
rs42114	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4719905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4722731	0.97[EUR][1000 genomes]
rs4722736	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4722738	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56070801	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60426718	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62454852	1.00[AFR][1000 genomes]
rs62454853	1.00[AFR][1000 genomes]
rs62454911	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62454912	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62454913	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62456949	1.00[AFR][1000 genomes]
rs6462044	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6462045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6946582	1.00[AFR][1000 genomes]
rs6951040	0.87[CEU][hapmap]
rs6960451	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6969516	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6969949	0.87[CEU][hapmap]
rs6970160	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73073375	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73073377	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73073379	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73073380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73073387	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73073388	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73073393	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73075112	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73075307	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73075310	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73075311	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73075322	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73075325	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73075329	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075331	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075354	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075359	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075361	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73075375	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73075378	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73078776	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73078778	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73083352	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73083361	0.85[AMR][1000 genomes]
rs73083363	0.85[AMR][1000 genomes]
rs73083364	0.85[AMR][1000 genomes]
rs73083371	0.85[AMR][1000 genomes]
rs73083377	0.85[AMR][1000 genomes]
rs73083378	0.85[AMR][1000 genomes]
rs7790914	1.00[CEU][hapmap]
rs7795207	0.88[CEU][hapmap];1.00[AFR][1000 genomes]
rs7807729	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs916854	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27751200-27756800	Enhancers	HepG2	liver
2	chr7:27751400-27756400	Enhancers	Fetal Intestine Small	intestine
3	chr7:27754000-27756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:27754800-27758800	Weak transcription	Gastric	stomach
5	chr7:27755000-27756000	Enhancers	Small Intestine	intestine
6	chr7:27755000-27756400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:27755000-27756600	Weak transcription	Brain Substantia Nigra	brain
8	chr7:27755000-27757800	Weak transcription	Fetal Lung	lung
9	chr7:27755200-27756200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:27755200-27756200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:27755200-27758000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:27755200-27762200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:27755200-27762800	Weak transcription	Brain Angular Gyrus	brain
14	chr7:27755400-27757800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:27755600-27758800	Weak transcription	Fetal Intestine Large	intestine
16	chr7:27755800-27756200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links