Variant report

Variant	rs6462045
Chromosome Location	chr7:27750441-27750442
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27748144..27751771-chr7:27755375..27758191,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10249314	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1029604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11540483	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11761773	1.00[AFR][1000 genomes]
rs1468443	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17680908	1.00[AFR][1000 genomes]
rs2158892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs42090	0.83[AMR][1000 genomes]
rs42114	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4719905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4722731	1.00[EUR][1000 genomes]
rs4722736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4722738	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56070801	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60426718	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62454852	1.00[AFR][1000 genomes]
rs62454853	1.00[AFR][1000 genomes]
rs62454911	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62454912	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62454913	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62456949	1.00[AFR][1000 genomes]
rs6462044	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6946582	1.00[AFR][1000 genomes]
rs6960451	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969516	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6970160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073375	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073377	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073379	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073387	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073388	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073393	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075112	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73075307	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075310	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075311	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075322	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075325	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075329	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075331	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075354	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075359	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075361	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075375	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075378	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73078776	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73078778	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083352	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73083361	0.85[AMR][1000 genomes]
rs73083363	0.85[AMR][1000 genomes]
rs73083364	0.85[AMR][1000 genomes]
rs73083371	0.85[AMR][1000 genomes]
rs73083377	0.85[AMR][1000 genomes]
rs73083378	0.85[AMR][1000 genomes]
rs7795207	1.00[AFR][1000 genomes]
rs7807729	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27749400-27755000	Weak transcription	Small Intestine	intestine
2	chr7:27749600-27754400	Weak transcription	HMEC	breast
3	chr7:27749800-27751200	Weak transcription	HepG2	liver
4	chr7:27749800-27754400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:27750000-27753800	Weak transcription	HUVEC	blood vessel
6	chr7:27750000-27754200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:27750000-27754200	Weak transcription	NH-A	brain
8	chr7:27750000-27754400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:27750200-27752600	Weak transcription	K562	blood
10	chr7:27750200-27753800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:27750200-27753800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:27750200-27754000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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