Variant report

Variant	rs6960451
Chromosome Location	chr7:27741465-27741466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27740264..27742549-chr7:27743332..27746196,2	K562	blood:
2	chr7:27700850..27702613-chr7:27740814..27743637,2	K562	blood:
3	chr7:27674511..27676385-chr7:27740361..27743199,2	K562	blood:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10249314	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1029604	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11540483	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1468443	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2158892	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs42090	0.80[AMR][1000 genomes]
rs42114	0.80[AMR][1000 genomes]
rs4719905	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4722731	1.00[EUR][1000 genomes]
rs4722736	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4722738	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56070801	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60426718	0.87[EUR][1000 genomes]
rs62454911	0.80[AMR][1000 genomes]
rs62454912	0.80[AMR][1000 genomes]
rs62454913	0.80[AMR][1000 genomes]
rs6462044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6462045	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969516	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6970160	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073375	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073377	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073379	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073380	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073387	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073388	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073393	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075112	0.80[AMR][1000 genomes]
rs73075307	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075310	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075311	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075322	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075325	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075329	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075331	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075354	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075359	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075361	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075375	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73075378	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73078776	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73078778	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083352	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73083361	0.82[AMR][1000 genomes]
rs73083363	0.82[AMR][1000 genomes]
rs73083364	0.82[AMR][1000 genomes]
rs73083371	0.82[AMR][1000 genomes]
rs73083377	0.82[AMR][1000 genomes]
rs73083378	0.82[AMR][1000 genomes]
rs7807729	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:27734200-27742600	Weak transcription	Osteobl	bone
3	chr7:27738000-27742400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:27738200-27749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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