Variant report

Variant	rs73075329
Chromosome Location	chr7:27853281-27853282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27848154..27850966-chr7:27851903..27854305,3	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10249314	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1029604	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11540483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11761773	1.00[AFR][1000 genomes]
rs1468443	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2158892	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs42090	0.80[AMR][1000 genomes]
rs42114	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4719905	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4722731	0.90[EUR][1000 genomes]
rs4722736	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4722738	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56070801	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60426718	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62454911	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62454912	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62454913	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62456949	1.00[AFR][1000 genomes]
rs6462044	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6462045	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6946582	1.00[AFR][1000 genomes]
rs6960451	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6969516	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6970160	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73073375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73073393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075112	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075310	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73075331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075361	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73075375	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73075378	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73078776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73078778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73083352	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73083361	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73083363	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73083364	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73083371	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73083377	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73083378	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7807729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv5677	chr7:27839504-27884505	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
2	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:27790600-27857400	Weak transcription	Colonic Mucosa	Colon
4	chr7:27798600-27874000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:27805800-27857600	Weak transcription	Esophagus	oesophagus
6	chr7:27806000-27882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:27806400-27878600	Weak transcription	Right Ventricle	heart
8	chr7:27815600-27874000	Weak transcription	Pancreas	Pancrea
9	chr7:27823800-27878000	Weak transcription	Spleen	Spleen
10	chr7:27824200-27876800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:27825600-27874000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:27826000-27870000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr7:27827000-27881800	Weak transcription	Small Intestine	intestine
14	chr7:27827600-27878400	Weak transcription	Fetal Kidney	kidney
15	chr7:27832600-27856000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:27833000-27858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:27833600-27856000	Weak transcription	Brain Anterior Caudate	brain
18	chr7:27833600-27858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:27834400-27873600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:27834800-27855600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:27835000-27856000	Weak transcription	GM12878-XiMat	blood
22	chr7:27835200-27856000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:27835200-27857600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr7:27835200-27878200	Weak transcription	Gastric	stomach
25	chr7:27836000-27856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:27836400-27856000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:27836400-27856000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:27836400-27867400	Weak transcription	HUVEC	blood vessel
29	chr7:27836400-27878000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:27836400-27882200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:27836800-27856400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:27837000-27856400	Weak transcription	Left Ventricle	heart
33	chr7:27837000-27873800	Weak transcription	Psoas Muscle	Psoas
34	chr7:27837600-27853400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:27837600-27857200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:27839000-27856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:27840000-27880600	Weak transcription	Hela-S3	cervix
38	chr7:27841800-27856000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:27842400-27877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:27842600-27855800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:27842800-27856000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:27843200-27856000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:27843400-27855800	Weak transcription	HepG2	liver
44	chr7:27843600-27877000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:27844000-27855600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr7:27844400-27856000	Weak transcription	Adipose Nuclei	Adipose
47	chr7:27845200-27855800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:27847200-27855600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:27847600-27885200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr7:27848000-27856000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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