Variant report

Variant	rs42114
Chromosome Location	chr7:27723064-27723065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27716474..27720411-chr7:27722310..27724514,4	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1014372	1.00[CEU][hapmap]
rs10249314	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1029604	0.80[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11540483	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11761718	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11761773	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11762056	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11764419	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11764624	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11765792	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11772163	1.00[CEU][hapmap]
rs11773626	0.80[AMR][1000 genomes]
rs1468443	0.83[AMR][1000 genomes]
rs17607303	1.00[CEU][hapmap]
rs17680908	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs17683094	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2158892	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs41326151	0.91[CEU][hapmap]
rs42090	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs42093	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs42095	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs42096	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs42097	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4719905	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4722736	0.80[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4722738	0.80[AMR][1000 genomes]
rs57863648	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59505903	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61659103	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454852	1.00[AFR][1000 genomes]
rs62454853	1.00[AFR][1000 genomes]
rs62454909	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62454912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62454913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62456949	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6462044	0.80[AMR][1000 genomes]
rs6462045	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs68015840	0.90[EUR][1000 genomes]
rs6946582	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6960451	0.80[AMR][1000 genomes]
rs6969516	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6970160	0.87[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73073375	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73073377	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73073379	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73073380	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73073387	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73073388	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73073393	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73075307	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075310	0.80[AMR][1000 genomes]
rs73075311	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075322	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075325	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075329	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075331	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73075354	0.80[AMR][1000 genomes]
rs73075359	0.80[AMR][1000 genomes]
rs73075361	1.00[AFR][1000 genomes]
rs73075375	1.00[AFR][1000 genomes]
rs73075378	1.00[AFR][1000 genomes]
rs73078776	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73078778	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7456595	0.80[AMR][1000 genomes]
rs7790914	0.80[CEU][hapmap]
rs7795207	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7807729	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27718600-27723800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:27719200-27726000	Weak transcription	Osteobl	bone
3	chr7:27720800-27724800	Weak transcription	HepG2	liver
4	chr7:27720800-27726000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:27720800-27727600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:27721000-27726000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:27721000-27726000	Weak transcription	NHDF-Ad	bronchial

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