Variant report

Variant	rs11773626
Chromosome Location	chr7:27553455-27553456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1014372	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11761718	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11761773	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11762056	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11764419	1.00[CEU][hapmap]
rs11764624	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11765792	0.82[EUR][1000 genomes]
rs11767719	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11768533	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11771265	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11772163	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17607155	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17607303	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17680908	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17683094	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs41326151	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs42090	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs42093	1.00[CEU][hapmap]
rs42097	1.00[CEU][hapmap]
rs42114	0.80[AMR][1000 genomes]
rs56934824	0.84[EUR][1000 genomes]
rs57863648	0.80[EUR][1000 genomes]
rs60247061	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60326970	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60600655	0.84[EUR][1000 genomes]
rs60939746	0.98[EUR][1000 genomes]
rs61659103	0.81[EUR][1000 genomes]
rs62454846	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454852	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454853	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454854	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454909	0.81[EUR][1000 genomes]
rs62454911	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62454912	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62454913	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62456899	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62456903	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62456949	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62456952	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62456953	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68015840	0.81[EUR][1000 genomes]
rs6945079	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6946582	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6955042	1.00[AFR][1000 genomes]
rs6978979	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075112	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73079438	0.88[EUR][1000 genomes]
rs7456595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7795207	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7803464	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27539400-27558000	Weak transcription	Fetal Stomach	stomach
2	chr7:27549200-27561200	Weak transcription	Liver	Liver
3	chr7:27549400-27554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:27549400-27554000	Weak transcription	Aorta	Aorta
5	chr7:27550400-27555600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:27550600-27555400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:27550600-27555600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:27550600-27555600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:27550600-27555600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:27550600-27555600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:27550600-27563400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:27550800-27555800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:27551200-27563800	Weak transcription	Left Ventricle	heart
14	chr7:27551600-27563800	Weak transcription	Placenta	Placenta
15	chr7:27552600-27564800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:27552600-27568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:27552800-27555600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:27552800-27557000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:27553000-27555600	Weak transcription	Fetal Lung	lung
20	chr7:27553000-27563600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:27553200-27581000	Weak transcription	Fetal Heart	heart

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