Variant report

Variant	rs73079438
Chromosome Location	chr7:27548192-27548193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1014372	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11762056	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11764624	0.80[EUR][1000 genomes]
rs11767719	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11768533	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11771265	0.88[EUR][1000 genomes]
rs11772163	0.86[EUR][1000 genomes]
rs11773626	0.88[EUR][1000 genomes]
rs17607155	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17607303	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17680908	0.86[EUR][1000 genomes]
rs41326151	0.82[AMR][1000 genomes]
rs60247061	0.88[EUR][1000 genomes]
rs60326970	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60939746	0.86[EUR][1000 genomes]
rs62454846	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62454847	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62454852	0.86[EUR][1000 genomes]
rs62454853	0.86[EUR][1000 genomes]
rs62454854	0.86[EUR][1000 genomes]
rs62456899	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62456903	0.82[AMR][1000 genomes]
rs62456952	0.82[AMR][1000 genomes]
rs62456953	0.82[AMR][1000 genomes]
rs6945079	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6978979	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7456595	0.88[EUR][1000 genomes]
rs7795207	0.86[EUR][1000 genomes]
rs7803464	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27539400-27558000	Weak transcription	Fetal Stomach	stomach
2	chr7:27541000-27548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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