Variant report

Variant	rs7456595
Chromosome Location	chr7:27564521-27564522
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1014372	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11761718	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11761773	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11762056	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11764419	1.00[CEU][hapmap]
rs11764624	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11765792	0.82[EUR][1000 genomes]
rs11767719	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11768533	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11771265	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11772163	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11773626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17607155	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17607303	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17680908	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17683094	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2158892	0.88[CEU][hapmap]
rs41326151	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs42090	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs42093	1.00[CEU][hapmap]
rs42097	1.00[CEU][hapmap]
rs42114	0.80[AMR][1000 genomes]
rs56934824	0.84[EUR][1000 genomes]
rs57863648	0.80[EUR][1000 genomes]
rs60247061	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60326970	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60600655	0.84[EUR][1000 genomes]
rs60939746	0.98[EUR][1000 genomes]
rs61659103	0.81[EUR][1000 genomes]
rs62454846	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454852	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454853	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454854	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454909	0.81[EUR][1000 genomes]
rs62454911	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62454912	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62454913	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62456899	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62456903	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62456949	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62456952	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62456953	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68015840	0.81[EUR][1000 genomes]
rs6945079	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6946582	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6955042	1.00[AFR][1000 genomes]
rs6970160	0.87[CEU][hapmap]
rs6978979	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075112	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73079438	0.88[EUR][1000 genomes]
rs7795207	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7803464	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27552600-27564800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:27552600-27568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:27553200-27581000	Weak transcription	Fetal Heart	heart
4	chr7:27553800-27564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:27555000-27568600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:27555800-27581000	Weak transcription	Gastric	stomach
7	chr7:27556000-27579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:27556000-27581600	Weak transcription	HMEC	breast
9	chr7:27556400-27584400	Weak transcription	NHEK	skin
10	chr7:27556400-27586400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:27556600-27568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:27556600-27569000	Weak transcription	NHDF-Ad	bronchial
13	chr7:27556800-27568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:27557200-27573400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:27558000-27579800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:27558200-27564600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:27558200-27566800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:27558400-27565200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:27558600-27565200	Weak transcription	HepG2	liver
20	chr7:27558600-27566400	Weak transcription	Fetal Intestine Small	intestine
21	chr7:27558600-27568200	Weak transcription	Right Ventricle	heart
22	chr7:27559400-27584200	Weak transcription	Pancreas	Pancrea
23	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
24	chr7:27559800-27593000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:27560000-27564800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:27560600-27565800	Weak transcription	Lung	lung
27	chr7:27560800-27565200	Weak transcription	Thymus	Thymus
28	chr7:27560800-27578800	Weak transcription	NHLF	lung
29	chr7:27561000-27564600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:27561200-27566600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:27561200-27568400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:27561200-27580200	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:27561200-27580600	Strong transcription	Liver	Liver
34	chr7:27561400-27568200	Weak transcription	Fetal Brain Male	brain
35	chr7:27561600-27583000	Weak transcription	Colonic Mucosa	Colon
36	chr7:27561800-27568400	Weak transcription	HSMMtube	muscle
37	chr7:27561800-27580200	Weak transcription	Fetal Stomach	stomach
38	chr7:27562400-27565200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:27562400-27565600	Weak transcription	Hela-S3	cervix
40	chr7:27562400-27568600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:27562400-27579800	Weak transcription	NH-A	brain
42	chr7:27562400-27581000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:27562400-27581000	Weak transcription	Spleen	Spleen
44	chr7:27562600-27565400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:27562600-27568800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr7:27563000-27564600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:27563000-27565400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr7:27563000-27580000	Weak transcription	Fetal Thymus	thymus
49	chr7:27563000-27581000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr7:27563200-27579800	Weak transcription	Brain Angular Gyrus	brain

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