Variant report

Variant	rs42096
Chromosome Location	chr7:27710833-27710834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27701957..27704245-chr7:27706162..27711056,8	K562	blood:
2	chr7:27702921..27706495-chr7:27708435..27711221,3	K562	blood:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11761718	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11761773	0.83[EUR][1000 genomes]
rs11762056	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11764419	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11764624	0.85[EUR][1000 genomes]
rs11765792	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11768533	0.82[AMR][1000 genomes]
rs17683094	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41326151	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs42090	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs42093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs42095	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs42097	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs42114	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57863648	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59505903	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60326970	0.80[EUR][1000 genomes]
rs61659103	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62454846	0.82[AMR][1000 genomes]
rs62454847	0.82[AMR][1000 genomes]
rs62454909	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62454911	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62454912	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62454913	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62456899	0.80[EUR][1000 genomes]
rs62456903	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62456949	0.83[EUR][1000 genomes]
rs62456952	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62456953	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68015840	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6945079	0.82[AMR][1000 genomes]
rs6946582	0.83[EUR][1000 genomes]
rs6978979	0.82[AMR][1000 genomes]
rs73075112	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27704200-27711000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:27709600-27711400	Enhancers	K562	blood
3	chr7:27709600-27711400	Enhancers	NHDF-Ad	bronchial
4	chr7:27710000-27711200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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