Variant report

Variant	rs571800259
Chromosome Location	chr11:4009436-4009437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv971974	chr11:4009259-4018790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3984000-4010400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:3987000-4010400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:3989400-4010600	Weak transcription	Spleen	Spleen
4	chr11:3989400-4031000	Weak transcription	Aorta	Aorta
5	chr11:3994400-4016600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:4000600-4010800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:4001400-4011800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:4002600-4009600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr11:4003000-4010600	Weak transcription	Esophagus	oesophagus
10	chr11:4003200-4016600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:4004400-4009600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:4004600-4010600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:4004800-4010000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:4005000-4010200	Weak transcription	Dnd41	blood
15	chr11:4005400-4011800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:4005800-4010800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:4006200-4010400	Weak transcription	Brain Anterior Caudate	brain
18	chr11:4006200-4013800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:4006400-4016600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:4006800-4022600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:4007000-4010400	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:4007000-4010600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:4007000-4010600	Weak transcription	Fetal Thymus	thymus
24	chr11:4007000-4010600	Weak transcription	Left Ventricle	heart
25	chr11:4007000-4010800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:4007000-4011200	Weak transcription	K562	blood
27	chr11:4007000-4012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:4007200-4010400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:4007200-4010400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:4007200-4010400	Weak transcription	Thymus	Thymus
31	chr11:4007200-4010600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:4007200-4013800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:4007200-4014000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:4007600-4010400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:4007600-4010400	Weak transcription	Fetal Brain Female	brain
36	chr11:4007600-4010400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:4007600-4010600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr11:4007800-4010400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:4007800-4015000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:4008000-4009600	Enhancers	HepG2	liver
41	chr11:4008400-4010400	Enhancers	Fetal Lung	lung
42	chr11:4008400-4010600	Enhancers	Colon Smooth Muscle	Colon
43	chr11:4008600-4010000	Weak transcription	Fetal Brain Male	brain
44	chr11:4008600-4015400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:4008800-4009600	Strong transcription	Primary T cells from cord blood	blood
46	chr11:4008800-4010000	Enhancers	Rectal Smooth Muscle	rectum
47	chr11:4008800-4010400	Enhancers	Fetal Stomach	stomach
48	chr11:4008800-4010600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:4009000-4013800	Weak transcription	Primary B cells from cord blood	blood
50	chr11:4009200-4009600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links