Variant report

Variant	rs57184009
Chromosome Location	chr6:131359882-131359883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131356533..131360824-chr6:131360872..131363958,3	MCF-7	breast:
2	chr6:131356781..131360402-chr6:131360756..131363630,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1888958	0.83[AFR][1000 genomes]
rs2327004	0.83[AFR][1000 genomes]
rs58685490	0.96[AFR][1000 genomes]
rs73617149	0.83[AFR][1000 genomes]
rs73619002	0.92[AFR][1000 genomes]
rs73620198	0.92[AFR][1000 genomes]
rs73621507	1.00[AFR][1000 genomes]
rs73623312	0.83[AFR][1000 genomes]
rs73625628	1.00[AFR][1000 genomes]
rs73625632	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131351400-131360200	Weak transcription	Small Intestine	intestine
3	chr6:131351400-131361400	Weak transcription	Psoas Muscle	Psoas
4	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:131351600-131360200	Weak transcription	Fetal Stomach	stomach
6	chr6:131351600-131374600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:131351800-131360000	Weak transcription	A549	lung
8	chr6:131352000-131360000	Weak transcription	NH-A	brain
9	chr6:131352200-131360200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:131352200-131360200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:131352400-131374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:131353800-131364000	Weak transcription	Ovary	ovary
13	chr6:131356600-131375000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:131357200-131360000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:131357400-131367200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:131358000-131360000	Enhancers	Osteobl	bone
17	chr6:131358200-131360200	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:131358600-131360800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:131359000-131360000	Weak transcription	Aorta	Aorta
20	chr6:131359000-131374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:131359200-131360600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:131359400-131360000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:131359400-131360000	Enhancers	NHLF	lung
24	chr6:131359400-131360400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:131359400-131360800	Enhancers	Fetal Lung	lung
26	chr6:131359400-131360800	Enhancers	HSMM	muscle
27	chr6:131359600-131360400	Enhancers	Adipose Nuclei	Adipose
28	chr6:131359600-131360600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:131359600-131360800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:131359800-131360000	Enhancers	NHDF-Ad	bronchial
31	chr6:131359800-131360200	Flanking Active TSS	HepG2	liver
32	chr6:131359800-131360400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:131359800-131360600	Enhancers	Brain Hippocampus Middle	brain
34	chr6:131359800-131360800	Enhancers	Liver	Liver
35	chr6:131359800-131360800	Enhancers	Brain Anterior Caudate	brain
36	chr6:131359800-131360800	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:131359800-131360800	Enhancers	Fetal Kidney	kidney
38	chr6:131359800-131361000	Enhancers	Brain Substantia Nigra	brain
39	chr6:131359800-131361000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:131359800-131361200	Enhancers	Colon Smooth Muscle	Colon

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