Variant report

Variant	rs571847285
Chromosome Location	chr6:161815389-161815390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161813445..161815530-chr6:162115453..162117705,2	MCF-7	breast:
2	chr6:161815002..161815512-chr6:161919264..161919910,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv869611	chr6:161690974-161817564	Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1025168	chr6:161702621-161831885	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv5577	chr6:161775026-161819733	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv481861	chr6:161802883-162160197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1033192	chr6:161812419-161860010	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv886821	chr6:161812626-161859628	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1024921	chr6:161814295-161860636	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv2761040	chr6:161814307-161860636	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv520078	chr6:161814907-161860010	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv605066	chr6:161814907-161860010	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv481930	chr6:161815297-161860058	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161780600-161835800	Weak transcription	Right Atrium	heart
2	chr6:161811000-161815400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:161814400-161815600	Enhancers	Psoas Muscle	Psoas
4	chr6:161814400-161817800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:161814600-161815600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:161814800-161817800	Enhancers	Brain Germinal Matrix	brain
7	chr6:161815000-161815400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:161815000-161815400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:161815000-161815400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:161815000-161815400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:161815000-161815400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:161815000-161815400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:161815000-161815400	Enhancers	Fetal Kidney	kidney
14	chr6:161815000-161815400	Flanking Active TSS	Fetal Lung	lung
15	chr6:161815000-161815400	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:161815000-161815600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:161815000-161815800	Enhancers	HSMM	muscle
18	chr6:161815200-161815400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:161815200-161815400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:161815200-161815400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:161815200-161815400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:161815200-161815400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:161815200-161815400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:161815200-161815400	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:161815200-161815400	Enhancers	Fetal Brain Female	brain
26	chr6:161815200-161815400	Flanking Active TSS	HSMMtube	muscle
27	chr6:161815200-161815400	Flanking Active TSS	K562	blood
28	chr6:161815200-161815400	Flanking Active TSS	NHDF-Ad	bronchial
29	chr6:161815200-161815400	Flanking Active TSS	Osteobl	bone
30	chr6:161815200-161815600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:161815200-161815600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:161815200-161815600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:161815200-161815600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:161815200-161815600	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr6:161815200-161815600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:161815200-161815600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:161815200-161815600	Enhancers	Brain Substantia Nigra	brain
38	chr6:161815200-161815600	Enhancers	Dnd41	blood
39	chr6:161815200-161815600	Enhancers	GM12878-XiMat	blood
40	chr6:161815200-161815600	Enhancers	NH-A	brain
41	chr6:161815200-161815600	Flanking Active TSS	NHEK	skin
42	chr6:161815200-161815600	Enhancers	NHLF	lung
43	chr6:161815200-161815800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:161815200-161815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:161815200-161815800	Enhancers	Primary T cells fromperipheralblood	blood
46	chr6:161815200-161815800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:161815200-161815800	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr6:161815200-161815800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:161815200-161815800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr6:161815200-161815800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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