Variant report
| Variant | rs57189846 |
|---|---|
| Chromosome Location | chr12:44832089-44832090 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1104356 | 1.00[AMR][1000 genomes] |
| rs1612439 | 1.00[AMR][1000 genomes] |
| rs1623888 | 1.00[AMR][1000 genomes] |
| rs1627100 | 1.00[AMR][1000 genomes] |
| rs17094468 | 1.00[AMR][1000 genomes] |
| rs1798019 | 1.00[AMR][1000 genomes] |
| rs1798029 | 1.00[AMR][1000 genomes] |
| rs1798030 | 1.00[AMR][1000 genomes] |
| rs1798034 | 1.00[AMR][1000 genomes] |
| rs55885620 | 1.00[AMR][1000 genomes] |
| rs56041151 | 1.00[AMR][1000 genomes] |
| rs56147425 | 1.00[AMR][1000 genomes] |
| rs56341304 | 1.00[AMR][1000 genomes] |
| rs56888768 | 1.00[AMR][1000 genomes] |
| rs57792241 | 1.00[AMR][1000 genomes] |
| rs58093009 | 1.00[AMR][1000 genomes] |
| rs58264920 | 1.00[AMR][1000 genomes] |
| rs58491255 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74078474 | 1.00[AMR][1000 genomes] |
| rs74085005 | 1.00[AMR][1000 genomes] |
| rs74085118 | 1.00[AMR][1000 genomes] |
| rs74087507 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74087508 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74087522 | 1.00[AMR][1000 genomes] |
| rs840763 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049818 | chr12:44486312-45133783 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44823400-44839400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
