Variant report

Variant	rs74087522
Chromosome Location	chr12:44824303-44824304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1104356	1.00[AMR][1000 genomes]
rs1612439	1.00[AMR][1000 genomes]
rs1623888	1.00[AMR][1000 genomes]
rs1627100	1.00[AMR][1000 genomes]
rs17094468	1.00[AMR][1000 genomes]
rs1798019	1.00[AMR][1000 genomes]
rs1798029	1.00[AMR][1000 genomes]
rs1798030	1.00[AMR][1000 genomes]
rs1798034	1.00[AMR][1000 genomes]
rs55885620	1.00[AMR][1000 genomes]
rs56041151	1.00[AMR][1000 genomes]
rs56147425	1.00[AMR][1000 genomes]
rs56341304	1.00[AMR][1000 genomes]
rs56888768	1.00[AMR][1000 genomes]
rs57189846	1.00[AMR][1000 genomes]
rs57792241	1.00[AMR][1000 genomes]
rs58093009	1.00[AMR][1000 genomes]
rs58264920	1.00[AMR][1000 genomes]
rs58491255	1.00[AMR][1000 genomes]
rs74078474	1.00[AMR][1000 genomes]
rs74085005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085118	1.00[AMR][1000 genomes]
rs74087507	1.00[AMR][1000 genomes]
rs74087508	1.00[AMR][1000 genomes]
rs840763	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44821600-44824600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:44823400-44839400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:44824000-44825000	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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