Variant report

Variant	rs57195574
Chromosome Location	chr10:50216190-50216191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2254861	1.00[ASN][1000 genomes]
rs2255134	0.90[ASN][1000 genomes]
rs2255357	1.00[ASN][1000 genomes]
rs2255379	1.00[ASN][1000 genomes]
rs2255486	1.00[ASN][1000 genomes]
rs2264845	1.00[ASN][1000 genomes]
rs57192152	0.91[ASN][1000 genomes]
rs58468873	0.89[ASN][1000 genomes]
rs59250742	0.89[ASN][1000 genomes]
rs59443750	0.89[ASN][1000 genomes]
rs60282422	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61403024	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7080920	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs883016	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50210800-50219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50210800-50223600	Weak transcription	Spleen	Spleen
3	chr10:50211000-50216200	Weak transcription	Fetal Intestine Large	intestine
4	chr10:50211200-50216200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:50213400-50223000	Enhancers	Ovary	ovary
6	chr10:50213800-50216200	Weak transcription	Adipose Nuclei	Adipose
7	chr10:50215000-50219400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:50215200-50218400	Enhancers	Fetal Brain Male	brain
9	chr10:50215200-50222400	Enhancers	Left Ventricle	heart
10	chr10:50215400-50219400	Enhancers	Fetal Stomach	stomach
11	chr10:50215600-50216600	Enhancers	Stomach Smooth Muscle	stomach
12	chr10:50215800-50216800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:50216000-50216200	Enhancers	Right Ventricle	heart
14	chr10:50216000-50217400	Enhancers	Psoas Muscle	Psoas
15	chr10:50216000-50218000	Enhancers	Fetal Lung	lung
16	chr10:50216000-50218800	Enhancers	Right Atrium	heart
17	chr10:50216000-50219800	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:50216000-50219800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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