Variant report

Variant	rs59443750
Chromosome Location	chr10:50232412-50232413
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2254861	0.89[ASN][1000 genomes]
rs2255134	0.84[ASN][1000 genomes]
rs2255357	0.89[ASN][1000 genomes]
rs2255379	0.89[ASN][1000 genomes]
rs2255486	0.89[ASN][1000 genomes]
rs2264845	0.89[ASN][1000 genomes]
rs57192152	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57195574	0.89[ASN][1000 genomes]
rs58468873	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59250742	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60282422	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61403024	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7080920	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs883016	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50218600-50238200	Weak transcription	Esophagus	oesophagus
2	chr10:50220400-50233600	Weak transcription	Gastric	stomach
3	chr10:50221000-50233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:50222000-50233800	Weak transcription	Lung	lung
5	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
7	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:50224600-50244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:50227800-50237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:50227800-50238800	Weak transcription	HSMMtube	muscle
11	chr10:50227800-50243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:50230800-50233400	Enhancers	Fetal Lung	lung
13	chr10:50231200-50232800	Enhancers	Brain Substantia Nigra	brain
14	chr10:50231200-50232800	Enhancers	Fetal Stomach	stomach
15	chr10:50231400-50232800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:50231400-50232800	Enhancers	Right Ventricle	heart
17	chr10:50231400-50233000	Enhancers	Adipose Nuclei	Adipose
18	chr10:50231400-50233000	Enhancers	Colon Smooth Muscle	Colon
19	chr10:50231400-50233600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:50231400-50233800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:50231400-50234000	Genic enhancers	Fetal Muscle Leg	muscle
22	chr10:50231400-50234400	Enhancers	Ovary	ovary
23	chr10:50231600-50232600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:50231600-50232600	Enhancers	Psoas Muscle	Psoas
25	chr10:50231600-50233000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:50231600-50233000	Enhancers	Stomach Smooth Muscle	stomach
27	chr10:50231600-50234000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:50231600-50234200	Enhancers	Fetal Intestine Small	intestine
29	chr10:50231800-50232800	Enhancers	Right Atrium	heart
30	chr10:50232000-50232600	Enhancers	Brain Angular Gyrus	brain
31	chr10:50232200-50232600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:50232200-50234000	Enhancers	Placenta	Placenta
33	chr10:50232200-50234000	Enhancers	Left Ventricle	heart
34	chr10:50232200-50241800	Weak transcription	Fetal Kidney	kidney
35	chr10:50232400-50232600	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr10:50232400-50232800	Enhancers	Aorta	Aorta
37	chr10:50232400-50232800	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain

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