Variant report

Variant	rs572026036
Chromosome Location	chr15:72765929-72765930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr15:72765836-72766875	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:72765894-72767099	GM12892	blood:	n/a	n/a
3	CREB1	chr15:72765774-72767081	GM12878	blood:	n/a	chr15:72766102-72766115
4	E2F4	chr15:72765886-72766752	MCF10A-Er-Src	breast:	n/a	chr15:72766103-72766112 chr15:72766290-72766302 chr15:72766105-72766114 chr15:72766301-72766308
5	CTCF	chr15:72765872-72766854	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:72765737-72766951	SK-N-SH	brain:	n/a	n/a
7	BCL3	chr15:72765450-72767786	A549	lung:	n/a	chr15:72767688-72767697 chr15:72766587-72766600 chr15:72767366-72767375
8	IRF1	chr15:72765670-72766919	K562	blood:	n/a	n/a
9	POLR2A	chr15:72765868-72766909	U87	brain:	n/a	n/a
10	JUN	chr15:72765892-72766812	K562	blood:	n/a	chr15:72766104-72766113 chr15:72766289-72766298 chr15:72766100-72766113
11	JUN	chr15:72765884-72766634	K562	blood:	n/a	chr15:72766104-72766113 chr15:72766289-72766298 chr15:72766100-72766113
12	ATF2	chr15:72765765-72766771	GM12878	blood:	n/a	chr15:72766643-72766657
13	POLR2A	chr15:72765802-72767083	K562	blood:	n/a	n/a
14	CTCF	chr15:72765868-72766171	K562	blood:	n/a	n/a
15	CREB1	chr15:72765816-72767157	HepG2	liver:	n/a	chr15:72766102-72766115
16	TBP	chr15:72765837-72767840	K562	blood:	n/a	n/a
17	FOS	chr15:72765839-72766716	MCF10A-Er-Src	breast:	n/a	chr15:72766104-72766113 chr15:72766289-72766298
18	SIN3A	chr15:72765845-72767732	GM12878	blood:	n/a	n/a
19	BCL3	chr15:72765776-72766785	A549	lung:	n/a	chr15:72766587-72766600
20	TAL1	chr15:72765477-72767094	K562	blood:	n/a	n/a
21	BHLHE40	chr15:72765602-72766850	GM12878	blood:	n/a	chr15:72766718-72766734
22	GATA3	chr15:72765698-72767958	A549	lung:	n/a	n/a
23	POLR2A	chr15:72765819-72767923	GM12878	blood:	n/a	n/a
24	POLR2A	chr15:72765859-72766849	HepG2	liver:	n/a	n/a
25	POLR2A	chr15:72765298-72767176	SK-N-MC	brain:	n/a	n/a
26	MAX	chr15:72765355-72768226	A549	lung:	n/a	n/a
27	STAT3	chr15:72765910-72766610	MCF10A-Er-Src	breast:	n/a	n/a
28	EP300	chr15:72765800-72766845	K562	blood:	n/a	chr15:72766476-72766492 chr15:72766581-72766597 chr15:72766037-72766047
29	JUND	chr15:72765340-72768137	SK-N-SH	brain:	n/a	chr15:72766104-72766113 chr15:72766289-72766298
30	POLR2A	chr15:72765904-72767199	ECC-1	luminal epithelium:	n/a	n/a
31	MYC	chr15:72765912-72768147	MCF10A-Er-Src	breast:	n/a	n/a
32	BCLAF1	chr15:72765843-72766924	GM12878	blood:	n/a	chr15:72766587-72766600
33	RELA	chr15:72765805-72767007	GM12891	blood:	n/a	n/a
34	MAX	chr15:72765872-72767800	ECC-1	luminal epithelium:	n/a	n/a
35	JUND	chr15:72765893-72767014	GM12878	blood:	n/a	chr15:72766104-72766113 chr15:72766289-72766298
36	MTA3	chr15:72765400-72766891	GM12878	blood:	n/a	n/a
37	FOXP2	chr15:72765857-72766783	SK-N-MC	brain:	n/a	n/a
38	JUN	chr15:72765858-72766681	K562	blood:	n/a	chr15:72766104-72766113 chr15:72766289-72766298 chr15:72766100-72766113
39	MXI1	chr15:72765889-72766798	Hela-S3	cervix:	n/a	chr15:72766229-72766244 chr15:72766231-72766246
40	POLR2A	chr15:72765485-72768004	Hela-S3	cervix:	n/a	n/a
41	FOXA2	chr15:72765664-72767063	A549	lung:	n/a	n/a
42	POLR2A	chr15:72765752-72768051	H1-neurons	neurons:	n/a	n/a
43	FOSL2	chr15:72765237-72766903	A549	lung:	n/a	chr15:72766104-72766113 chr15:72766289-72766298
44	TAF1	chr15:72765876-72767928	H1-hESC	embryonic stem cell:	n/a	n/a
45	EP300	chr15:72765772-72766913	A549	lung:	n/a	chr15:72766476-72766492 chr15:72766581-72766597 chr15:72766037-72766047
46	POLR2A	chr15:72765860-72767955	Raji	blood:	n/a	n/a
47	POLR2A	chr15:72765860-72766885	HepG2	liver:	n/a	n/a
48	POLR2A	chr15:72765560-72766946	HepG2	liver:	n/a	n/a
49	MAX	chr15:72765906-72768235	GM12878	blood:	n/a	n/a
50	GTF2F1	chr15:72765822-72766739	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:72750881..72760234-chr15:72764528..72769120,23	MCF-7	breast:
2	chr15:72765683..72767705-chr9:134393823..134395690,2	MCF-7	breast:
3	chr15:72692001..72694745-chr15:72764264..72766502,3	MCF-7	breast:
4	chr15:72497804..72499839-chr15:72765083..72768033,2	K562	blood:
5	chr15:72666558..72670735-chr15:72765041..72769475,12	MCF-7	breast:
6	chr15:72765203..72766825-chr15:73342381..73345092,2	MCF-7	breast:
7	chr15:72458549..72461101-chr15:72765178..72767894,2	K562	blood:
8	chr15:72666408..72669827-chr15:72764535..72767754,3	MCF-7	breast:
9	chr15:72520897..72524301-chr15:72765072..72768298,5	K562	blood:
10	chr15:72765821..72767148-chr3:160282369..160283817,3	Hela-S3	cervix:
11	chr15:72667344..72672450-chr15:72764755..72768100,8	K562	blood:
12	chr15:72765898..72766528-chr22:39096921..39097517,2	Hela-S3	cervix:
13	chr15:72609440..72614186-chr15:72765313..72769259,6	MCF-7	breast:
14	chr15:72765119..72766854-chr2:171784790..171787087,2	K562	blood:
15	chr15:72742962..72745809-chr15:72764358..72766379,2	MCF-7	breast:
16	chr15:72764026..72766932-chr15:72877151..72879938,2	K562	blood:
17	chr15:72764850..72767674-chr15:72977020..72979928,5	K562	blood:
18	chr15:72765370..72766302-chr5:43313191..43314042,2	Hela-S3	cervix:
19	chr15:72765649..72767573-chr15:72851905..72854681,2	MCF-7	breast:
20	chr15:72476533..72478146-chr15:72764010..72766539,2	MCF-7	breast:
21	chr15:72649215..72653843-chr15:72765321..72768285,4	MCF-7	breast:
22	chr15:72523282..72524844-chr15:72764635..72767200,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HEXA-3	chr15:72761633-72766666	NONHSAT047096

Variant related genes	Relation type
ARIH1	TF binding region
ENSG00000207690	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000175202	Chromatin interaction
ENSG00000130714	Chromatin interaction
ENSG00000271072	Chromatin interaction
ENSG00000261187	Chromatin interaction
ENSG00000140463	Chromatin interaction
ENSG00000100221	Chromatin interaction
ENSG00000186432	Chromatin interaction
ENSG00000115806	Chromatin interaction
ENSG00000140488	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000273025	Chromatin interaction
ENSG00000229320	Chromatin interaction
ENSG00000112972	Chromatin interaction
ENSG00000175318	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000243007	Chromatin interaction
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
8	nsv827384	chr15:72765222-72768609	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72755000-72766000	Weak transcription	Ovary	ovary
2	chr15:72761000-72766200	Weak transcription	Small Intestine	intestine
3	chr15:72765200-72766000	Flanking Active TSS	Hela-S3	cervix
4	chr15:72765400-72766000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:72765400-72766000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:72765400-72766000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr15:72765400-72766000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr15:72765400-72766000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:72765400-72766000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:72765400-72766000	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr15:72765400-72766000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:72765400-72766000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr15:72765400-72766000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr15:72765400-72766000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:72765400-72766000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr15:72765400-72766000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:72765400-72766000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr15:72765400-72766000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr15:72765400-72766000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr15:72765400-72766000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:72765400-72766000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr15:72765400-72766000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:72765400-72766000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:72765400-72766000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:72765400-72766000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:72765400-72766000	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr15:72765400-72766000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr15:72765400-72766000	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr15:72765400-72766000	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr15:72765400-72766000	Flanking Active TSS	Fetal Kidney	kidney
31	chr15:72765400-72766000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr15:72765400-72766000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:72765400-72766000	Flanking Active TSS	Thymus	Thymus
34	chr15:72765400-72766000	Flanking Active TSS	Dnd41	blood
35	chr15:72765400-72766000	Flanking Active TSS	HSMMtube	muscle
36	chr15:72765400-72766000	Flanking Active TSS	NHDF-Ad	bronchial
37	chr15:72765400-72766000	Flanking Active TSS	NHEK	skin
38	chr15:72765400-72766000	Flanking Active TSS	NHLF	lung
39	chr15:72765400-72766200	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr15:72765400-72766200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr15:72765400-72766200	Flanking Active TSS	Osteobl	bone
42	chr15:72765400-72766400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:72765400-72766400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:72765400-72766400	Flanking Active TSS	HMEC	breast
45	chr15:72765400-72766400	Flanking Active TSS	HSMM	muscle
46	chr15:72765400-72766400	Flanking Active TSS	NH-A	brain
47	chr15:72765400-72768600	Active TSS	H1 Cell Line	embryonic stem cell
48	chr15:72765400-72768800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:72765400-72769000	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr15:72765400-72769200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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